audy / miseq-16S-pipelineLinks
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
β11Updated 9 years ago
Alternatives and similar repositories for miseq-16S-pipeline
Users that are interested in miseq-16S-pipeline are comparing it to the libraries listed below
Sorting:
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β33Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.β23Updated 3 weeks ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Dataβ11Updated last year
- A Shotgun Metagenome Annotation Pipelineβ23Updated 8 years ago
- Maximum Likelihood Amplicon Pipelineβ22Updated last year
- β18Updated 9 years ago
- Advanced metagenomic Sequence Analysis in Rβ15Updated 6 years ago
- Microbiome researchβ20Updated 3 years ago
- β23Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)β18Updated 3 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.β26Updated 8 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- Tools for extracting individual genomes from metagenomesβ17Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β21Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.β14Updated last year
- Workshop for NGS'18 conference, Barcelona 2018β24Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomesβ27Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)β19Updated 6 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samplesβ13Updated 4 years ago
- β27Updated last year
- accessory functions for processing microbial community dataβ12Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Readsβ21Updated 7 years ago
- A fast method for analysis of composition of microbiomesβ8Updated 3 years ago
- R package for computing alpha and beta contributional diversity metricsβ10Updated 2 years ago
- Talk to the NCBI EUtilsβ22Updated 4 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulationsβ12Updated 7 years ago