HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
☆11Sep 1, 2015Updated 11 years ago
Alternatives and similar repositories for miseq-16S-pipeline
Users that are interested in miseq-16S-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆43Jul 19, 2021Updated 5 years ago
- ☆19Oct 9, 2017Updated 8 years ago
- ☆43Jul 31, 2017Updated 9 years ago
- Simple and crude scripts that I've written for my own work that may be of help to others with similar tasks☆12Jun 16, 2020Updated 6 years ago
- ☆17Jun 21, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 7 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 4 years ago
- R - Fetch, build and deploy.☆12Jul 25, 2023Updated 3 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆16Mar 25, 2022Updated 4 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆10Apr 29, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- Aligner for sequencing data☆21Apr 20, 2026Updated 4 months ago
- Soil Data Rescue and Harmonization:☆18Updated this week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)