audy / miseq-16S-pipelineLinks
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
☆11Updated 9 years ago
Alternatives and similar repositories for miseq-16S-pipeline
Users that are interested in miseq-16S-pipeline are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 weeks ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Microbiome research☆21Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ggtree version of plotTree.R☆18Updated 6 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆18Updated 9 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18Updated 11 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Tools for visualising microbial community amplicon data☆67Updated last week
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- tidyMicro GitHup Repository☆19Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated last year
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- ☆27Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 10 months ago
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago