audy / miseq-16S-pipelineLinks
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
☆11Updated 10 years ago
Alternatives and similar repositories for miseq-16S-pipeline
Users that are interested in miseq-16S-pipeline are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 5 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Metagenomic AnalySis with QUantitative pipEline☆12Updated 6 years ago
- Microbiome research☆21Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 3 weeks ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Updated 3 years ago
- ggtree version of plotTree.R☆18Updated 7 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 6 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- Fast alignment-free pangenome creation and exploration☆28Updated 5 years ago
- Create your own PanViz visualizations☆21Updated 8 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 6 years ago
- Tools for visualising microbial community amplicon data☆71Updated 2 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- ☆18Updated 10 years ago
- Working with the outputs of sourmash in R☆28Updated 2 weeks ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 9 months ago
- Visualization tool for genetic reassortment☆21Updated 3 months ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18Updated 11 years ago
- Simple R utilities for working with HMMER☆19Updated last year
- Talk to the NCBI EUtils☆22Updated 5 years ago