audy / miseq-16S-pipelineLinks
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
β11Updated 9 years ago
Alternatives and similar repositories for miseq-16S-pipeline
Users that are interested in miseq-16S-pipeline are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in Rβ18Updated 6 years ago
- Schloss Lab Tools for Reproducible Microbiome Research π©β31Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Updated 4 years ago
- Maximum Likelihood Amplicon Pipelineβ22Updated last year
- A comprehensive and customizable R package for microbiome analysis.β23Updated last month
- ggtree version of plotTree.Rβ18Updated 6 years ago
- Microbiome researchβ21Updated 3 years ago
- Microbiota Analysis in R Easilyβ11Updated 3 years ago
- Analysis of RNAseq data from (host-associated) microbial mixturesβ12Updated 5 years ago
- Ying's tools for analysis, with particular focus on microbiome dataβ41Updated last week
- β18Updated 9 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.β26Updated 8 years ago
- Visualization tool for genetic reassortmentβ21Updated 3 months ago
- Talk to the NCBI EUtilsβ22Updated 4 years ago
- Metagenomic AnalySis with QUantitative pipElineβ12Updated 6 years ago
- A set of R scripts for the analysis of microbial profilesβ41Updated last year
- A set of R functions that help faciliate a lot of tedious processingβ18Updated 6 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieserβ13Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)β38Updated last year
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β34Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β23Updated last year
- Tao Yan's Plot Toolkitβ12Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVAβ38Updated 9 years ago
- β27Updated last year
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Dataβ11Updated last year
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipelineβ13Updated last year
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualizβ¦β13Updated 5 months ago
- ClusterScan, search for clusters of features in a given annotation.β11Updated 3 years ago
- tidyMicro GitHup Repositoryβ19Updated 3 years ago
- A shiny package for microbiome functional enrichment analysisβ37Updated 3 months ago