pgp-pasteur-fr / MetaGenSenseLinks
A web application framework for analysis and visualization of High throughput Sequencing metagenomic data
☆10Updated 8 years ago
Alternatives and similar repositories for MetaGenSense
Users that are interested in MetaGenSense are comparing it to the libraries listed below
Sorting:
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated last month
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- reference free variant assembly☆33Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- Public Health England SNP calling pipeline.☆37Updated 6 years ago
- ☆37Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 8 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Pipelines to do MinION sequencing of Zika virus☆16Updated 6 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago