Alternatives and similar repositories for namco:

Users that are interested in namco are comparing it to the libraries listed below

• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆42Updated 8 months ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 9 months ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• bulksoil / BioProtocol
  Repo for a Microbiome Protocol
  ☆9Updated 6 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• Russel88 / DAtest
  Compare different differential abundance and expression methods
  ☆51Updated 2 years ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆11Updated 8 months ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆28Updated 7 months ago
• zoecastillo / microbiomeExplorer
  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…
  ☆70Updated 2 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated last week
• knightlab-analyses / reference-frames
  ☆20Updated 4 years ago
• microsud / microbiomeutilities
  The is mostly a wrapper tool using phyloseq and microbiome R packages.
  ☆34Updated 2 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• statdivlab / radEmu
  ☆52Updated this week
• ChiLiubio / file2meco
  Transform files to the microtable object with microeco package
  ☆24Updated 2 months ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last month
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆15Updated last year
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆14Updated 2 years ago
• mestaki / qiime2-to-BugBase
  ☆12Updated 3 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆43Updated 2 years ago
• lch14forever / beem-static
  📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
  ☆9Updated 3 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• gavinmdouglas / FuncDiv
  R package for computing alpha and beta contributional diversity metrics
  ☆10Updated last year
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆35Updated 9 years ago