A command-line tool for profiling CAZyme abundances in metagenomic datasets.
☆36May 21, 2026Updated this week
Alternatives and similar repositories for cayman
Users that are interested in cayman are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated last year
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive and customizable R package for microbiome analysis.☆24Aug 10, 2025Updated 9 months ago
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆28May 13, 2026Updated last week
- Microbiome analysis☆56May 15, 2026Updated last week
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆18Jan 13, 2026Updated 4 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆40Sep 17, 2025Updated 8 months ago
- ☆15Jun 26, 2025Updated 11 months ago
- ARG normalization by mapping to the ARO ontology.☆65Apr 25, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Materials for my scikit-learn tutorial☆12May 7, 2026Updated 2 weeks ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 6 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆13Jul 21, 2025Updated 10 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Jul 8, 2024Updated last year
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆74Sep 1, 2022Updated 3 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆164Apr 23, 2025Updated last year
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated last year
- Umbrella documentation project for Nextstrain☆18May 18, 2026Updated last week
- Faultless AST for Open Biomedical Ontologies.☆28Oct 25, 2025Updated 7 months ago
- Bioinformatics program inStrain☆186Mar 12, 2026Updated 2 months ago
- Apply to FNK0062☆18Sep 22, 2025Updated 8 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jan 7, 2026Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficient and fast querying and parsing of GTDB's data☆29Updated this week
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆262May 13, 2026Updated last week
- Network construction, analysis, and comparison for microbial compositional data☆179Dec 18, 2025Updated 5 months ago
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- metag-rev-sup☆23Jun 21, 2017Updated 8 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago