SchlossLab / Sze_Obesity_mBio_2016
☆12Updated 7 years ago
Alternatives and similar repositories for Sze_Obesity_mBio_2016
Users that are interested in Sze_Obesity_mBio_2016 are comparing it to the libraries listed below
Sorting:
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 11 months ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Microbiome research☆20Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last month
- ☆13Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 7 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- ☆27Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- ☆27Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated last month
- tidyMicro GitHup Repository☆18Updated 3 years ago
- ☆19Updated last year
- ☆14Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Code to accompany "Multitable Methods for Microbiome Data Integration"☆9Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 2 weeks ago
- A continually expanding collection of microbiome analysis tools☆17Updated 3 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- An R package to visualize high-throughput sequencing data.☆12Updated 5 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 6 years ago