SchlossLab / Sze_Obesity_mBio_2016
☆12Updated 7 years ago
Alternatives and similar repositories for Sze_Obesity_mBio_2016:
Users that are interested in Sze_Obesity_mBio_2016 are comparing it to the libraries listed below
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 10 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 10 months ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 4 months ago
- ☆26Updated last year
- Microbiome research☆20Updated 2 years ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- ☆27Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 5 months ago
- ☆14Updated 2 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 6 years ago
- ☆13Updated last year
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- An R package to visualize high-throughput sequencing data.☆12Updated 5 years ago
- ☆32Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆14Updated 2 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago