Alternatives and similar repositories for toolbox:

Users that are interested in toolbox are comparing it to the libraries listed below

• cjneely10 / EukMetaSanity
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆21Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 2 months ago
• alexcritschristoph / soil_popgen
  Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes
  ☆16Updated 4 years ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆11Updated 3 years ago
• joshuakirsch / pseudoR
  ☆14Updated 2 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆25Updated 2 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆19Updated last year
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆12Updated 4 years ago
• wbazant / CORRAL
  ☆11Updated last year
• aweimann / traitar
  ☆22Updated last year
• pereiramemo / AGS-and-ACN-tools
  Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
  ☆14Updated 3 weeks ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 4 years ago
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 2 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆20Updated last year
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated last month
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 5 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• dgittins / CANT-HYD-HydrocarbonBiodegradation
  Hydrocarbon biodegradation gene annotation
  ☆15Updated 2 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 3 months ago
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆31Updated 2 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆24Updated last year
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 5 months ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated last month
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆32Updated last year
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 7 years ago