Arkadiy-Garber / BagOfTricks
A collection of python and bash scripts for various bioinformatics-related tasks
☆11Updated 5 months ago
Alternatives and similar repositories for BagOfTricks:
Users that are interested in BagOfTricks are comparing it to the libraries listed below
- ☆15Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Updated last year
- metabolic heatmap☆19Updated 5 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆14Updated 4 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆9Updated last month
- Cool Bioinformatics Scripts☆11Updated 9 months ago
- Integrative virome pipeline☆12Updated 4 months ago
- ☆12Updated last year
- A graduate-level elective course: Python Programming for Life Science Students☆9Updated 2 weeks ago
- ☆17Updated 9 months ago
- ☆31Updated 3 years ago
- various bioinformatic instruments☆8Updated 2 weeks ago
- Common scripts☆14Updated 2 weeks ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆20Updated last month
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 5 years ago
- ☆24Updated 8 months ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆14Updated 3 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆12Updated 9 months ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Updated 3 years ago
- ☆11Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated this week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆25Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 2 weeks ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆27Updated 2 months ago