Arkadiy-Garber / BagOfTricks
A collection of python and bash scripts for various bioinformatics-related tasks
☆11Updated 4 months ago
Alternatives and similar repositories for BagOfTricks:
Users that are interested in BagOfTricks are comparing it to the libraries listed below
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- A pipeline for whole genome assembly☆16Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆10Updated last year
- Cool Bioinformatics Scripts☆11Updated 8 months ago
- ☆12Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Common scripts☆14Updated this week
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 7 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated last month
- ☆24Updated 7 months ago
- ☆15Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 2 months ago
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆12Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 9 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- small scripts, functions or bits of code for parsing genomic data☆14Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆11Updated 8 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆41Updated last month
- scripts used to download and analyze insect assemblies from GenBank☆14Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 4 months ago
- various bioinformatic instruments☆8Updated 2 weeks ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 3 years ago