rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
☆29Jun 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for phylociraptor
Users that are interested in phylociraptor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 3 years ago
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆47Apr 8, 2026Updated 2 months ago
- Handy scripts for routine bioinformatic analysis☆21May 5, 2025Updated last year
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Pan-genome Analysis☆12May 4, 2025Updated last year
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 7 months ago
- Close assembly gaps using long-reads at high accuracy.☆52Feb 20, 2024Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 7 months ago
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆14Mar 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast gradient-based optimization of resistance surfaces☆17Jul 9, 2020Updated 5 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆37May 25, 2026Updated last month
- Workflows I find helpful for fungal genome annotation☆22Jun 30, 2023Updated 3 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Apr 4, 2026Updated 3 months ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆10Apr 29, 2021Updated 5 years ago
- ☆26Dec 3, 2025Updated 7 months ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆13Dec 16, 2025Updated 6 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated last month
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆44Aug 1, 2025Updated 11 months ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- ☆14Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- ☆15Oct 14, 2023Updated 2 years ago
- ☆13Aug 13, 2024Updated last year
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated last year
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year