sharpton / PhylOTU
PhylOTU identifies microbial OTUs from metagenomic data
☆24Updated 11 years ago
Related projects ⓘ
Alternatives and complementary repositories for PhylOTU
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 6 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Updated 5 years ago
- ☆18Updated 9 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Read contamination removal☆24Updated 9 months ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 2 months ago
- ☆13Updated 11 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆40Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated 11 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI☆24Updated 10 years ago