blajoie / hdf2tabLinks
convert from HDF5 matrix format to txt/tab (tsv) matrix format
☆10Updated 9 years ago
Alternatives and similar repositories for hdf2tab
Users that are interested in hdf2tab are comparing it to the libraries listed below
Sorting:
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 months ago
- ☆43Updated 9 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 9 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- ☆73Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 5 months ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated last month
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Lossless VCF compression☆21Updated 3 years ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- ☆21Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago