Concise Common Workflow Language
☆29Feb 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for ccwl
Users that are interested in ccwl are comparing it to the libraries listed below
Sorting:
- ☆16Aug 25, 2025Updated 6 months ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- High-reproducibility CWL runner powered by Guix☆21Jan 28, 2026Updated last month
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- This is my personal Emacs configuration.☆12May 15, 2021Updated 4 years ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 9 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Introduction to Workflows with Common Workflow Language☆11Apr 17, 2024Updated last year
- ☆29Mar 27, 2024Updated last year
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Apr 16, 2019Updated 6 years ago
- std::map/std::set implementation using the adaptive radix tree☆15Jul 14, 2021Updated 4 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- 📝 Easily convert Digital Object Identifier (DOI) and Uniform Resource Locator (URL) to BibTeX and DOI to plain text.☆38Apr 28, 2023Updated 2 years ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- ☆18May 10, 2023Updated 2 years ago
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago