Concise Common Workflow Language
☆29Jun 8, 2026Updated this week
Alternatives and similar repositories for ccwl
Users that are interested in ccwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆17Aug 25, 2025Updated 9 months ago
- High-reproducibility CWL runner powered by Guix☆24May 30, 2026Updated 2 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- GeneNetwork (2nd generation)☆39May 28, 2026Updated 2 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated 2 years ago
- This is my personal Emacs configuration.☆12May 15, 2021Updated 5 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- std::map/std::set implementation using the adaptive radix tree☆15Jul 14, 2021Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 2 weeks ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 7 years ago
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- ☆19May 10, 2023Updated 3 years ago
- [UNMAINTAINED] https://github.com/garrgravarr/guix-emacs☆28Nov 20, 2024Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust crate to Guix package definition☆17Nov 9, 2022Updated 3 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 3 years ago
- 📝 Easily convert Digital Object Identifier (DOI) and Uniform Resource Locator (URL) to BibTeX and DOI to plain text.☆38Apr 28, 2023Updated 3 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- Introduction to Workflows with Common Workflow Language☆11Apr 17, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- more than 80 gpl3+ licensed guile scheme libraries☆20Nov 22, 2025Updated 6 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago