klebgenomics / KleborateLinks
☆134Updated this week
Alternatives and similar repositories for Kleborate
Users that are interested in Kleborate are comparing it to the libraries listed below
Sorting:
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆108Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆172Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆145Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆145Updated this week
- Making whole bacterial genome sequencing data analysis easy☆114Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last week
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week
- SKESA assembler☆123Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆101Updated 3 years ago
- A toolbox for comparative genomics.☆106Updated 4 years ago
- Create a tree using Mash distances☆177Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 3 weeks ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- BSR-Based Allele Calling Algorithm☆146Updated this week
- DAS Tool☆161Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆203Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆97Updated 2 weeks ago
- Pan-genome wide association studies☆205Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago