klebgenomics / KleborateLinks
☆129Updated last month
Alternatives and similar repositories for Kleborate
Users that are interested in Kleborate are comparing it to the libraries listed below
Sorting:
- WtP: Phage identification via nextflow and docker or singularity☆106Updated last week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆146Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- DDBJ Fast Annotation and Submission Tool☆82Updated 3 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆167Updated last week
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆103Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆135Updated 5 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated 3 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆109Updated 4 months ago
- Create a tree using Mash distances☆170Updated last year
- SKESA assembler☆122Updated 10 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆170Updated 3 weeks ago
- ☆84Updated last year
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- ☆144Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆118Updated 2 months ago
- The ARTIC field bioinformatics pipeline☆125Updated this week
- A toolbox for comparative genomics.☆104Updated 4 years ago
- a short-read polishing tool for long-read assemblies☆175Updated last week
- Long-read mock community experiments☆106Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆149Updated last month
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆71Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆161Updated this week