klebgenomics / KleborateLinks
☆129Updated last week
Alternatives and similar repositories for Kleborate
Users that are interested in Kleborate are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- WtP: Phage identification via nextflow and docker or singularity☆105Updated this week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 4 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆162Updated this week
- DDBJ Fast Annotation and Submission Tool☆82Updated last week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆111Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- Making whole bacterial genome sequencing data analysis easy☆110Updated 4 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 5 months ago
- SKESA assembler☆124Updated 11 months ago
- A toolbox for comparative genomics.☆103Updated 4 years ago
- Create a tree using Mash distances☆170Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated last week
- DAS Tool☆157Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated this week
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆103Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆186Updated this week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆154Updated 5 months ago
- BSR-Based Allele Calling Algorithm