klebgenomics / Kleborate
☆124Updated last month
Alternatives and similar repositories for Kleborate:
Users that are interested in Kleborate are comparing it to the libraries listed below
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆132Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆121Updated last week
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆140Updated this week
- Metagenomic classification of long-read sequencing data☆77Updated last week
- a short-read polishing tool for long-read assemblies☆155Updated 9 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 3 weeks ago
- Pan-genome wide association studies☆191Updated 9 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆138Updated 2 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆140Updated 5 months ago
- Making whole bacterial genome sequencing data analysis easy☆103Updated 4 months ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- BSR-Based Allele Calling Algorithm☆141Updated 2 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated last week
- The ARTIC field bioinformatics pipeline☆120Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- snipit: summarise snps relative to your reference sequence☆155Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆93Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆215Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆108Updated last week
- SKESA assembler☆115Updated 5 months ago
- Create a tree using Mash distances☆159Updated last year
- Nanopore data assembler☆146Updated 2 years ago
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆142Updated last month
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆205Updated 3 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆83Updated last year