☆148Aug 31, 2026Updated this week
Alternatives and similar repositories for Kleborate
Users that are interested in Kleborate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The tool for in silico serotyping☆65Aug 24, 2026Updated last week
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆66Jun 5, 2025Updated last year
- BSR-Based Allele Calling Algorithm☆150Updated this week
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆183Apr 16, 2025Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆109Jun 2, 2026Updated 3 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 2 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 5 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆149Jun 20, 2021Updated 5 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆523Aug 5, 2026Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆507Jul 17, 2026Updated last month
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 2 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆206Jun 10, 2026Updated 2 months ago
- ☆38Apr 14, 2022Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆671Aug 7, 2026Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Rapid haploid variant calling and core genome alignment☆591Dec 12, 2025Updated 8 months ago
- Antibiotic resistance prediction in minutes☆120Mar 27, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Prediction of prophages from bacterial genomes☆88May 1, 2026Updated 4 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆157Updated this week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆154Jul 24, 2026Updated last month
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆429May 20, 2026Updated 3 months ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 3 weeks ago
- Clermont PCR method In-Silico☆27Feb 8, 2024Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆91Jul 17, 2026Updated last month
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆76Updated this week
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 8 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 8 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Aug 24, 2026Updated last week