klebgenomics / KleborateLinks
☆125Updated this week
Alternatives and similar repositories for Kleborate
Users that are interested in Kleborate are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- WtP: Phage identification via nextflow and docker or singularity☆105Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆137Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 9 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆115Updated 3 months ago
- Making whole bacterial genome sequencing data analysis easy☆106Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- a short-read polishing tool for long-read assemblies☆166Updated 11 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Create a tree using Mash distances☆167Updated last year
- Pan-genome wide association studies☆198Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- snipit: summarise snps relative to your reference sequence☆159Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 2 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆230Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆140Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- Long-read mock community experiments☆105Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆97Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆109Updated last year
- Nanopore data assembler☆156Updated 3 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago
- SKESA assembler☆119Updated 7 months ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆134Updated last year