Variant annotation and merging pipeline
☆43Jul 22, 2025Updated 9 months ago
Alternatives and similar repositories for svpop
Users that are interested in svpop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phased assembly variant caller☆139Dec 4, 2024Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 10 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- ☆23Jul 27, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Jasmine: SV Merging Across Samples☆250Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆406Mar 21, 2026Updated last month
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆21Jan 4, 2026Updated 3 months ago
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Misassembly Identifier☆18Apr 21, 2026Updated last week
- Set of tools to manipulate and visualize modified base bam files☆60Aug 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Apr 9, 2026Updated 3 weeks ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated last year
- displays multiple genomic sequences in the form of a tube map☆224Nov 12, 2025Updated 5 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- ☆14Oct 29, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆21Mar 24, 2026Updated last month
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Dec 24, 2024Updated last year
- ☆39Feb 22, 2023Updated 3 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 5 years ago
- ☆11May 12, 2021Updated 4 years ago
- ☆14Mar 28, 2025Updated last year
- Structural variant caller for low-depth long-read sequencing data☆30Jan 6, 2025Updated last year
- Annotation and Ranking of Structural Variation☆293Apr 16, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆124Oct 9, 2025Updated 6 months ago
- ☆32Jan 3, 2025Updated last year
- structural variant database software☆48Apr 21, 2026Updated last week
- Application of pan-genome for population☆117Oct 26, 2025Updated 6 months ago
- Pangenome-based genome inference☆166Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago