Variant annotation and merging pipeline
☆44Jul 22, 2025Updated last year
Alternatives and similar repositories for svpop
Users that are interested in svpop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Phased assembly variant caller☆147Dec 4, 2024Updated last year
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated last week
- ☆23Jul 27, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆424Oct 3, 2026Updated last week
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆23Jul 23, 2026Updated 2 months ago
- Phased structural variant discovery in pangenomes☆43Sep 18, 2026Updated 3 weeks ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆36Aug 18, 2025Updated last year
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- CADD-SV – a framework to score the effect of structural variants☆23Sep 17, 2026Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆31Sep 21, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Dec 24, 2024Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆29Aug 12, 2026Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 4 years ago
- ☆14Jul 14, 2026Updated 2 months ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- displays multiple genomic sequences in the form of a tube map☆229Nov 12, 2025Updated 10 months ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Gene copy number prediction from k-mer frequencies☆18Apr 15, 2026Updated 5 months ago
- Misassembly Identifier☆28Sep 5, 2026Updated last month
- ☆14Mar 28, 2025Updated last year
- ☆12May 12, 2021Updated 5 years ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆30Jan 6, 2025Updated last year
- ☆41Feb 22, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Application of pan-genome for population☆122Oct 26, 2025Updated 11 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 3 months ago