Pan-Genomic Matching Statistics
☆57Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for spumoni
Users that are interested in spumoni are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- ☆19May 10, 2023Updated 3 years ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆133Jul 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆107May 6, 2026Updated 2 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆45Mar 9, 2026Updated 4 months ago
- Bifrost graph gene caller.☆98Jun 18, 2026Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last month
- R-Index-F Library for Pattern Matching☆12Aug 8, 2024Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆37Apr 26, 2026Updated 2 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 3 weeks ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- Metagenomics microbial abundance quantification☆28Sep 22, 2022Updated 3 years ago
- GBZ file format for pangenome graphs☆46Apr 18, 2026Updated 3 months ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Simple succinct data structures (in Rust)☆55Apr 18, 2026Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago