kamimrcht / REINDEERLinks
REINDEER REad Index for abuNDancE quERy
☆56Updated 2 months ago
Alternatives and similar repositories for REINDEER
Users that are interested in REINDEER are comparing it to the libraries listed below
Sorting:
- Pan-Genomic Matching Statistics☆53Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- ☆45Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆68Updated 2 weeks ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated last year
- ☆44Updated 3 years ago
- my PhD thesis☆36Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Using kallisto for metagenomic analysis☆49Updated 8 years ago