kamimrcht / REINDEERLinks
REINDEER REad Index for abuNDancE quERy
☆56Updated 6 months ago
Alternatives and similar repositories for REINDEER
Users that are interested in REINDEER are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆46Updated 2 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 10 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆35Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆46Updated this week