pachterlab / monodLinks
The Monod package fits CME models to sequencing data.
β32Updated 2 months ago
Alternatives and similar repositories for monod
Users that are interested in monod are comparing it to the libraries listed below
Sorting:
- 𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.β¦β28Updated 3 years ago
- University of Cambridge PhD thesisβ15Updated 4 years ago
- β19Updated last week
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β18Updated 3 months ago
- Identify cell barcodes from single-cell genomics sequencing experimentsβ43Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Dataβ25Updated last year
- Differential ATAC-seq toolkitβ27Updated last year
- scoverβ23Updated last year
- A toolking for cell type hierarchies: marker selection & consistent classificationβ22Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.β36Updated last week
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primaryβ¦β15Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seqβ25Updated last year
- Benchmarking long-read RNA-seq analysis toolsβ27Updated 3 months ago
- β17Updated last year
- kallisto index tag extractorβ20Updated 5 years ago
- β29Updated 2 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq dataβ2Updated 4 years ago
- Inferring gene co-expression networks from single cell gene expression dataβ24Updated 2 years ago
- simplified cellranger for long-read dataβ19Updated last month
- Comprehensive pipeline for donor demultiplexing in single cellβ24Updated last week
- β16Updated 5 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlasβ25Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq dataβ17Updated last year
- epigenome analysis to rank transcription factorsβ13Updated 5 years ago
- A method for analyzing scATAC-seq experiments.β30Updated 3 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimatesβ27Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumoursβ29Updated 2 months ago
- Dynamic models for single-cell RNA-seq time series.β40Updated 6 years ago
- Scripts to install as a Bioconda package for making workflowsβ18Updated 8 months ago
- Snakemake pipeline for microexon discovery and quantificationβ20Updated 4 months ago