pachterlab / monodLinks
The Monod package fits CME models to sequencing data.
☆33Updated last week
Alternatives and similar repositories for monod
Users that are interested in monod are comparing it to the libraries listed below
Sorting:
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated 2 years ago
- University of Cambridge PhD thesis☆16Updated 5 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- ☆16Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated last year
- ☆18Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- scover☆24Updated 2 years ago
- A rust framework to make using alevin-fry even simpler☆61Updated 8 months ago
- ☆23Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated last month
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 weeks ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆47Updated 2 weeks ago
- ☆20Updated 7 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Finding gene expression states in scRNA-seq data☆50Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆18Updated last year
- A single cell sequencing read simulator.☆33Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 months ago
- miRTrace☆11Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago