The Monod package fits CME models to sequencing data.
☆37Apr 24, 2026Updated 4 months ago
Alternatives and similar repositories for monod
Users that are interested in monod are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 9 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆21May 24, 2025Updated last year
- ☆33Jun 21, 2026Updated 3 months ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆12Aug 30, 2024Updated 2 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 11 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Fast FASTQ sample demultiplexing in Rust.☆71Aug 28, 2026Updated 3 weeks ago
- Repository for the clone2vec python package☆25Sep 8, 2026Updated last week
- ☆12Sep 10, 2026Updated last week
- ☆30Apr 13, 2026Updated 5 months ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆17Updated this week
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Fast array utilities☆15Updated this week
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Sep 30, 2025Updated 11 months ago
- ☆29Sep 4, 2023Updated 3 years ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Apr 16, 2021Updated 5 years ago
- From geospatial to spatial -omics☆103Jul 24, 2026Updated last month
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Calendar of doctoral students funding programs☆14Oct 21, 2025Updated 11 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated 2 years ago
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆20Oct 10, 2024Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆40Aug 31, 2026Updated 3 weeks ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆20Mar 7, 2024Updated 2 years ago
- tools and notes for long reads analysis☆24Mar 31, 2025Updated last year
- colosseum system - open source fraction collector for laboratories☆33Mar 8, 2023Updated 3 years ago
- physics-informed neural network based method for solving single-cell population dynamics☆17Updated this week
- ☆17Jul 12, 2024Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- ☆11Jan 29, 2025Updated last year