The Monod package fits CME models to sequencing data.
☆35Apr 24, 2026Updated 3 months ago
Alternatives and similar repositories for monod
Users that are interested in monod are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 8 months ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- ☆20May 24, 2025Updated last year
- ☆32Jun 21, 2026Updated last month
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Aug 30, 2024Updated last year
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 10 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆19Jun 3, 2026Updated 2 months ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆70Jul 30, 2026Updated last week
- Repository for the clone2vec python package☆24May 6, 2026Updated 3 months ago
- ☆12Apr 28, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆29Apr 13, 2026Updated 3 months ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆16Updated this week
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆17Feb 1, 2021Updated 5 years ago
- Fast array utilities☆15Updated this week
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Sep 30, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolbox for single-cell data analysis on sample level☆25Updated this week
- ☆29Sep 4, 2023Updated 2 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- From geospatial to spatial -omics☆103Jul 24, 2026Updated 2 weeks ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Calendar of doctoral students funding programs☆14Oct 21, 2025Updated 9 months ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.☆19Oct 10, 2024Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆20Mar 7, 2024Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- tools and notes for long reads analysis☆24Mar 31, 2025Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 8 months ago