Alternatives and similar repositories for monod:

Users that are interested in monod are comparing it to the libraries listed below

• pachterlab / qcbc
  ☆19Updated last month
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆25Updated 4 months ago
• cbg-ethz / scIsoPrep
  Single-cell Iso Prep
  ☆14Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆26Updated 3 years ago
• Teichlab / sctk
  ☆33Updated 4 months ago
• czbiohub-sf / molecular-cross-validation
  Calibrate and compare methods for denoising single-cell RNA-seq data
  ☆2Updated 4 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆21Updated 2 months ago
• jacobhepkema / scover
  scover
  ☆22Updated last year
• songlab-cal / scquint
  ☆15Updated 8 months ago
• dissatisfaction-ai / scHierarchy
  A toolking for cell type hierarchies: marker selection & consistent classification
  ☆20Updated last year
• sandberg-lab / txburst
  Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…
  ☆37Updated 9 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆27Updated 2 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• rajewsky-lab / spacemake
  ☆39Updated this week
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆39Updated 6 years ago
• PoolLab / generecovery
  ☆29Updated last year
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• cellatlas / human
  ☆42Updated 3 months ago
• yuifu / millefy
  Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
  ☆28Updated 5 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆18Updated 2 months ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated last year
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆30Updated this week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆32Updated 2 months ago
• COMBINE-lab / pyroe
  ☆16Updated 3 weeks ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆24Updated 9 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 7 months ago