theislab / CFGenLinks
☆25Updated 5 months ago
Alternatives and similar repositories for CFGen
Users that are interested in CFGen are comparing it to the libraries listed below
Sorting:
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Updated 6 months ago
- ☆70Updated 6 months ago
- ☆36Updated 9 months ago
- ☆90Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- ☆38Updated last month
- A model developed for the generation of scRNA-seq data☆84Updated 2 weeks ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- Modeling complex perturbations with CellFlow☆118Updated this week
- ☆95Updated 5 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆150Updated 2 months ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆100Updated 5 months ago
- ☆59Updated 2 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- ☆26Updated 2 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Updated this week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 2 weeks ago
- ☆18Updated 9 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆122Updated 3 weeks ago
- ☆62Updated last year
- ☆32Updated 6 months ago
- ☆116Updated last week
- ☆14Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆29Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆35Updated 2 months ago
- ☆52Updated 10 months ago