SONGDONGYUAN1994 / scDesign3Links
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
☆112Updated 3 months ago
Alternatives and similar repositories for scDesign3
Users that are interested in scDesign3 are comparing it to the libraries listed below
Sorting:
- ☆122Updated 7 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆147Updated 2 years ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Single cell omics biology annotations☆51Updated 8 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- R implementation of GeneTrajectory☆69Updated last year
- ☆45Updated 2 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Multi-omic velocity inference☆113Updated last year
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- ☆87Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆81Updated this week
- ☆59Updated 3 weeks ago
- ☆47Updated last year
- ☆22Updated last year
- trajectory inference☆105Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆80Updated 4 months ago
- inferring regulatory cellular dynamics☆61Updated 3 months ago
- ☆56Updated last year
- Unified access to several second-generation deconvolution methods☆88Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆58Updated 7 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆33Updated last month