A reporting pipeline for visualization of immunopeptidomics MS data.
☆16Nov 19, 2022Updated 3 years ago
Alternatives and similar repositories for MhcVizPipe
Users that are interested in MhcVizPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- Quantitative proteomics workflow☆16Sep 30, 2022Updated 3 years ago
- Democratizing ML in proteomics☆53May 6, 2026Updated 2 weeks ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Mar 31, 2026Updated last month
- A library for QC report based on MultiQC framework☆30May 7, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆32Mar 27, 2026Updated last month
- A cross-platform proteomics data analysis suite☆295May 11, 2026Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Apr 13, 2026Updated last month
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 8, 2026Updated last week
- Support for Java, C#, Python☆17Dec 7, 2025Updated 5 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated this week
- Deep learning framework for proteomics☆152Apr 21, 2026Updated last month
- A label free quantification tool.☆19Jan 13, 2026Updated 4 months ago
- HUPO-PSI Standardized peptidoform notation☆24Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Shiny ClinVar web server source code☆12Apr 29, 2019Updated 7 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 5 years ago
- Realtime quality control for mass spectrometry data acquisition☆22Updated this week
- HLA-I ligand predictor☆45Mar 19, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated last year
- Community-curated tutorials and datasets for ML in proteomics☆59Oct 31, 2025Updated 6 months ago
- A deep learning toolkit for mass spectrometry☆90Jan 7, 2026Updated 4 months ago
- ProXL Web App -- Visualize and Share Protein Cross-linking Data☆13Updated this week
- Instrument Application Programming Interface☆54May 11, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆14Oct 8, 2024Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆131Mar 23, 2026Updated last month
- Proteomics search & quantification so fast that it feels like magic☆289May 8, 2026Updated last week
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54May 14, 2026Updated last week
- Peptide-MHC I binding affinity prediction☆250May 13, 2026Updated last week
- R-Shiny GUI integrated with the MSstats package family☆20Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆76Apr 24, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆47Updated this week
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Differential Expression Analysis tool box R lang package for omics data☆46May 8, 2026Updated last week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆48Apr 30, 2026Updated 3 weeks ago
- This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This proj…☆33Nov 24, 2024Updated last year
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- A python dictionary that uses Redis as in-memory storage backend to facilitate distributed computing applications development.☆23Jun 22, 2023Updated 2 years ago