Alternatives and similar repositories for MhcVizPipe

Users that are interested in MhcVizPipe are comparing it to the libraries listed below

• mathiaskalxdorf / IceR
  Quantitative proteomics workflow
  ☆15Updated 2 years ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 5 months ago
• Nesvilab / IonQuant
  A label free quantification tool.
  ☆17Updated last month
• MatteoLacki / timsr
  TimsR: Easy access to timsTOF Pro data from R.
  ☆11Updated 4 years ago
• Nesvilab / MSBooster
  MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring
  ☆19Updated this week
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated last month
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆28Updated this week
• LiChenPU / NetID
  A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery
  ☆47Updated last year
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆26Updated last year
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated last month
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆24Updated 4 years ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆42Updated last year
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 7 months ago
• PayneLab / ProteomicsEducation
  ☆33Updated 2 weeks ago
• ZhuMSLab / DecoMetDIA
  ☆11Updated 3 years ago
• kentsislab / UltraQuant
  MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters
  ☆27Updated 7 years ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆52Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆40Updated this week
• Noble-Lab / cascadia
  Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data
  ☆22Updated 5 months ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated this week
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆22Updated 5 years ago
• RASpicer / MetabolomicsTools
  ☆55Updated 4 years ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆31Updated 5 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 4 months ago
• bittremieux-lab / ANN-SoLo
  Spectral library searching using approximate nearest neighbor techniques.
  ☆43Updated 3 months ago
• InfectionMedicineProteomics / DPKS
  Data Processing Kitchen Sink for proteomics data
  ☆11Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆46Updated this week