Rescoring and spectral library generation pipeline for proteomics.
☆56May 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for oktoberfest
Users that are interested in oktoberfest are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Democratizing ML in proteomics☆53May 6, 2026Updated 3 weeks ago
- Python framework for Deep Learning in Proteomics☆40May 6, 2026Updated 3 weeks ago
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 6 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54May 19, 2026Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 11 months ago
- DL model to predict HLA peptide presentation☆16Jan 31, 2024Updated 2 years ago
- ☆29May 20, 2025Updated last year
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 3 months ago
- ☆46Mar 14, 2025Updated last year
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31May 13, 2026Updated 2 weeks ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆52May 19, 2026Updated last week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13May 12, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17May 15, 2026Updated 2 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆289May 8, 2026Updated 3 weeks ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 8, 2026Updated 3 weeks ago
- draw rectangular statistical cartograms - CRAN package☆23Apr 2, 2026Updated last month
- ☆11Feb 4, 2025Updated last year
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆45May 9, 2026Updated 2 weeks ago
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆31May 20, 2026Updated last week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An open-source Python package to unify raw MS data accession and storage.☆32Apr 13, 2026Updated last month
- A Python interface to proteomics data repositories☆37Jun 19, 2025Updated 11 months ago
- Python package for efficient mass spectrometry data processing and visualization☆169Mar 5, 2026Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆51Feb 27, 2025Updated last year
- Instrument Application Programming Interface☆55May 11, 2026Updated 2 weeks ago
- HUPO-PSI Standardized peptidoform notation☆24May 22, 2026Updated last week
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆30Mar 19, 2026Updated 2 months ago
- ☆16Oct 3, 2023Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Apr 11, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆15Mar 3, 2026Updated 2 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆77Apr 24, 2026Updated last month
- Python client for PRIDE Archive Rest API.☆40May 4, 2026Updated 3 weeks ago
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆443Apr 30, 2026Updated 3 weeks ago
- Deep learning framework for proteomics☆152Apr 21, 2026Updated last month
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22May 20, 2026Updated last week
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago