wilhelm-lab / oktoberfestLinks
Rescoring and spectral library generation pipeline for proteomics.
☆52Updated this week
Alternatives and similar repositories for oktoberfest
Users that are interested in oktoberfest are comparing it to the libraries listed below
Sorting:
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆50Updated this week
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated last week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆123Updated 5 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- Instrument Application Programming Interface☆51Updated 2 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆90Updated last month
- Democratizing ML in proteomics☆51Updated 2 weeks ago
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆78Updated last month
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated 2 weeks ago
- Deep learning framework for proteomics☆140Updated this week
- ☆21Updated 10 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated last week
- modular & open DIA search☆96Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- ☆44Updated 9 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆66Updated last week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆32Updated 2 months ago
- Python framework for Deep Learning in Proteomics☆36Updated last week
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 6 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Updated 2 years ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated 2 months ago
- ☆27Updated 7 months ago
- ☆13Updated last year
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated this week
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month