Alternatives and similar repositories for diaTracer

Users that are interested in diaTracer are comparing it to the libraries listed below

• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆50Updated last week
• MannLabs / alphadia
  modular & open DIA search
  ☆96Updated this week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆49Updated 6 months ago
• MannLabs / timsrust
  ☆27Updated 7 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆92Updated 3 weeks ago
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆15Updated last week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆60Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆51Updated 3 weeks ago
• Nesvilab / PTM-Shepherd
  A tool for summarizing open search results
  ☆16Updated last week
• gtluu / timsconvert
  ☆44Updated 9 months ago
• rusteomics / mzcore
  A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly
  ☆38Updated last week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆123Updated this week
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆49Updated 10 months ago
• Noble-Lab / Carafe
  High quality in silico spectral library generation for data-independent acquisition proteomics
  ☆16Updated last month
• thermofisherlsms / RawFileReader
  ☆65Updated 9 months ago
• mafreitas / tdf2mzml
  ☆30Updated 2 years ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 6 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆52Updated last week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆140Updated last week
• CompOmics / DeepLC
  DeepLC: Retention time prediction for peptides carrying any modification.
  ☆72Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆51Updated 2 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆32Updated 2 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆86Updated last week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆53Updated this week
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆106Updated last year
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆29Updated this week
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆37Updated 2 weeks ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆47Updated this week
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆79Updated last month
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆62Updated this week