pwilmart / PAW_pipelineLinks
A Comet-based, best practices proteomics pipeline.
☆38Updated last year
Alternatives and similar repositories for PAW_pipeline
Users that are interested in PAW_pipeline are comparing it to the libraries listed below
Sorting:
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆56Updated last week
- PDV: an integrative proteomics data viewer☆54Updated last month
- ☆64Updated last year
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆80Updated last year
- Differential Expression Analysis tool box R lang package for omics data☆45Updated last week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆36Updated last year
- R package - MSstats☆85Updated this week
- Report processing and protein quantification for MS-based proteomics☆47Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆81Updated 3 years ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆46Updated last month
- The repo for LFQ-Analyst☆30Updated last year
- ☆34Updated last month
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆95Updated last week
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆40Updated 6 months ago
- R package for functionally scoring phosphorylation sites☆21Updated 5 years ago
- Python client for PRIDE Archive Rest API.☆24Updated 4 months ago
- Absolute quantification package based on quantms.io☆15Updated 3 months ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28Updated 2 years ago
- ☆24Updated 2 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆29Updated last month
- TimsR: Easy access to timsTOF Pro data from R.☆12Updated 4 years ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated this week
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 6 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Updated 2 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated 3 weeks ago
- Documentation is available here:☆18Updated last week
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated 9 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 2 months ago