Python package for efficient mass spectrometry data processing and visualization
☆168Mar 5, 2026Updated 2 months ago
Alternatives and similar repositories for spectrum_utils
Users that are interested in spectrum_utils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆256Apr 22, 2026Updated last week
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- TidyMS: Tools for working with MS data in untargeted metabolomics☆61Jul 13, 2024Updated last year
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆91Aug 17, 2023Updated 2 years ago
- The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis …☆302Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆153Apr 28, 2026Updated last week
- Fundamental functions, annotation pipeline and constants for oktoberfest☆13Apr 25, 2026Updated last week
- Spectral library searching using approximate nearest neighbor techniques.☆49Feb 11, 2026Updated 2 months ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆35Feb 12, 2026Updated 2 months ago
- Proteomics search & quantification so fast that it feels like magic☆288Apr 21, 2026Updated 2 weeks ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Apr 17, 2026Updated 2 weeks ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆31Mar 27, 2026Updated last month
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆242Mar 7, 2026Updated last month
- Word2Vec based similarity measure of mass spectrometry data.☆84Nov 10, 2025Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The Interactive Peptide Spectral Annotator☆22Jun 9, 2020Updated 5 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 10 months ago
- The codebase of the OpenMS project☆589Updated this week
- ☆15May 30, 2025Updated 11 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆84Apr 20, 2026Updated 2 weeks ago
- pymzML - an interface between Python and mzML Mass spectrometry Files☆187Feb 3, 2026Updated 3 months ago
- A deep learning toolkit for mass spectrometry☆89Jan 7, 2026Updated 3 months ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆57Apr 23, 2026Updated last week
- CoreMS is a comprehensive mass spectrometry software framework☆64Updated this week
- Tools for treatment high res mass spectrum of natural organic matter samples☆11Aug 4, 2023Updated 2 years ago
- SDRF: The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆103Updated this week
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- Thermo MSFileReader Python bindings☆69May 4, 2021Updated 5 years ago
- pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.☆51Apr 9, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last month
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Apr 23, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated last week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Apr 22, 2026Updated last week
- Realtime quality control for mass spectrometry data acquisition☆22Updated this week
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆23Apr 17, 2026Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆75Apr 21, 2026Updated 2 weeks ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- Python module for lipidomics LC MS/MS data analysis☆20Jun 27, 2024Updated last year