bittremieuxlab / spectrum_utilsLinks
Python package for efficient mass spectrometry data processing and visualization
☆161Updated 3 weeks ago
Alternatives and similar repositories for spectrum_utils
Users that are interested in spectrum_utils are comparing it to the libraries listed below
Sorting:
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆147Updated this week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆92Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated 2 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 6 months ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆72Updated last month
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 2 weeks ago
- Deep learning framework for proteomics☆141Updated 3 weeks ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆124Updated 2 weeks ago
- Thermo MSFileReader Python bindings☆69Updated 4 years ago
- A list of tools on proteomics using deep learning☆106Updated last year
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆233Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆79Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated 3 weeks ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆91Updated last month
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Updated 2 years ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated 2 weeks ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 10 months ago
- Democratizing ML in proteomics☆51Updated last month
- Matthew The's implementation of MaRaCluster☆11Updated 6 months ago
- ☆44Updated 9 months ago
- asari, metabolomics data preprocessing☆57Updated last month
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆67Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆98Updated 3 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Updated 3 years ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Updated this week
- A deep learning toolkit for mass spectrometry☆86Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated 3 weeks ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆104Updated last week
- Instrument Application Programming Interface☆51Updated 3 months ago
- ☆15Updated 3 years ago