Alternatives and similar repositories for mzSpecLib

Users that are interested in mzSpecLib are comparing it to the libraries listed below

• MannLabs / alpharaw
  An open-source Python package to unify raw MS data accession and storage.
  ☆26Updated 2 weeks ago
• CompOmics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆44Updated 4 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆47Updated 4 months ago
• CompOmics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆28Updated last month
• wilhelm-lab / dlomix
  Python framework for Deep Learning in Proteomics
  ☆27Updated last month
• frallain / pymsfilereader
  Thermo MSFileReader Python bindings
  ☆69Updated 4 years ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆45Updated last month
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated 2 years ago
• gtluu / timsconvert
  ☆38Updated 4 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated 3 weeks ago
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆34Updated 3 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆47Updated 5 months ago
• CompOmics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆66Updated last month
• CompOmics / ms2rescore
  Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
  ☆59Updated last month
• pFindStudio / pDeep3
  MS/MS prediction for peptides
  ☆23Updated 4 years ago
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆29Updated last month
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 6 months ago
• Villen-Lab / pyAscore
  A python package for fast post translational modification localization, powered by Cython.
  ☆19Updated last year
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated 2 months ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 weeks ago
• statisticalbiotechnology / diffacto
  ☆13Updated last year
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆41Updated last year
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆22Updated 8 months ago
• pyQms / pyqms
  pyQms, generalized, fast and accurate mass spectrometry data quantification
  ☆28Updated last year
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• OpenMS / pyopenms_viz
  Streamlining Mass Spectrometry Data Visualization with Pandas
  ☆17Updated 2 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆88Updated 2 weeks ago
• shuzhao-li-lab / asari
  asari, metabolomics data preprocessing
  ☆50Updated last month
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated 3 weeks ago
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆53Updated 3 weeks ago