Create synthetic DIA LC-MS/MS for proteomics experiments
☆17Mar 16, 2023Updated 3 years ago
Alternatives and similar repositories for synthedia
Users that are interested in synthedia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High quality in silico spectral library generation for data-independent acquisition proteomics☆22Updated this week
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆61Updated this week
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- ☆12Feb 5, 2024Updated 2 years ago
- The Biochemical Algorithms Library in Julia☆24Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15May 28, 2026Updated 2 weeks ago
- Synthetic mzML writer☆14Mar 10, 2025Updated last year
- ☆29Jun 4, 2026Updated last week
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆16Mar 3, 2026Updated 3 months ago
- Community-curated tutorials and datasets for ML in proteomics☆59Oct 31, 2025Updated 7 months ago
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Apr 22, 2026Updated last month
- A project for exploring differentially active signaling paths related to proteomics datasets☆46Apr 2, 2026Updated 2 months ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Updated this week
- A cross-platform proteomics data analysis suite☆300Jun 1, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆93Aug 17, 2023Updated 2 years ago
- A conda-smithy repository for pymol-open-source.☆15Apr 22, 2026Updated last month
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 6 months ago
- Proteomics search & quantification so fast that it feels like magic☆295Jun 5, 2026Updated last week
- This is a collection of minimal code to visualize various aspects of proteomics data.☆84Jan 6, 2022Updated 4 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆24Apr 18, 2026Updated last month
- ☆12Mar 1, 2025Updated last year
- R package for optimized LC-MS spectra processing☆30May 18, 2026Updated 3 weeks ago
- Tools for metabolomic data☆41Oct 4, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆127Apr 19, 2026Updated last month
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 2 months ago
- Libraries for fine isotopic structure calculator.☆43Updated this week
- Using Biological Signals for Mass Recalibration of Mass Spectrometry Imaging Data☆11Apr 16, 2026Updated last month
- Python implementation of MATLAB's msalign function☆11Jun 7, 2026Updated last week
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆52Jun 5, 2026Updated last week
- Democratizing ML in proteomics☆53May 6, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Jul 6, 2023Updated 2 years ago
- A Framework for IMS-MS Raw Data Processing written in Rust and Python.☆21Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆79Jun 6, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆448Updated this week
- Rescoring and spectral library generation pipeline for proteomics.☆56Jun 8, 2026Updated last week
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- Example python-based plugins for iolite4.☆26Updated this week