Alternatives and similar repositories for alphatims:

Users that are interested in alphatims are comparing it to the libraries listed below

• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆79Updated this week
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆116Updated this week
• MannLabs / ProteomicsVisualization
  This is a collection of minimal code to visualize various aspects of proteomics data.
  ☆71Updated 3 years ago
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆31Updated this week
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆43Updated this week
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆112Updated 8 months ago
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆37Updated 2 weeks ago
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆45Updated 2 months ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆80Updated 4 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆64Updated 3 weeks ago
• gtluu / timsconvert
  ☆35Updated 3 weeks ago
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆58Updated 2 weeks ago
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆45Updated last week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆34Updated last week
• MannLabs / directlfq
  Fast and accurate label-free quantification for small and very large numbers of proteomes
  ☆44Updated this week
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆47Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆60Updated this week
• kevinkovalchik / RawTools
  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…
  ☆64Updated last year
• statisticalbiotechnology / diffacto
  ☆13Updated 11 months ago
• diogobor / Scout
  MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.
  ☆19Updated 3 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• tvpham / iq
  An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
  ☆24Updated 2 months ago
• levitsky / pyteomics
  Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…
  ☆124Updated 3 weeks ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆40Updated last month
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆115Updated last week
• mafreitas / tdf2mzml
  ☆25Updated last year
• vdemichev / diann-rpackage
  Report processing and protein quantification for MS-based proteomics
  ☆38Updated last year
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆91Updated 9 months ago
• michaelmarty / MassSpecCodingClub
  A community dedicated to education of computer coding applied to mass spectrometry applications.
  ☆51Updated last year