An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
☆94Feb 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for alphatims
Users that are interested in alphatims are comparing it to the libraries listed below
Sorting:
- Open-source C++ and Python module for opening binary timsTOF data files.☆50Updated this week
- ☆28May 20, 2025Updated 9 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆35Apr 14, 2025Updated 10 months ago
- An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Inst…☆28Jun 6, 2025Updated 8 months ago
- A modular, python-based framework for mass spectrometry. Powered by nbdev.☆185Apr 19, 2024Updated last year
- ☆22Jun 28, 2021Updated 4 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆12Nov 16, 2025Updated 3 months ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆92Nov 17, 2025Updated 3 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆49Feb 10, 2026Updated 3 weeks ago
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Deep learning framework for proteomics☆145Feb 19, 2026Updated last week
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Nov 6, 2025Updated 3 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- ☆30Oct 2, 2023Updated 2 years ago
- An open-source Python package to unify raw MS data accession and storage.☆31Feb 6, 2026Updated 3 weeks ago
- A cross-platform proteomics data analysis suite☆278Updated this week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆84Nov 21, 2025Updated 3 months ago
- DLL and SO from Bruker.☆12Feb 25, 2026Updated last week
- ☆45Mar 14, 2025Updated 11 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆150Feb 24, 2026Updated last week
- ☆11Feb 20, 2026Updated last week
- DIA-NN - a universal automated software suite for DIA proteomics data analysis.☆427Feb 5, 2026Updated 3 weeks ago
- Democratizing ML in proteomics☆50Feb 2, 2026Updated last month
- ☆37Dec 15, 2025Updated 2 months ago
- modular & open DIA search☆104Updated this week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆53Feb 19, 2026Updated last week
- High level functionality to support and simplify metabolomics data annotation.☆19Feb 5, 2026Updated 3 weeks ago
- ☆15Jun 3, 2021Updated 4 years ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Updated this week
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Feb 17, 2026Updated 2 weeks ago
- Proteomics search & quantification so fast that it feels like magic☆274Jan 6, 2026Updated last month
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Feb 18, 2026Updated 2 weeks ago
- Infrastructure of AlphaX ecosystem☆53Updated this week
- PyMassSpec extension for searching mass spectra using NIST's Mass Spectrum Search Engine.☆22Jan 20, 2026Updated last month
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆40Feb 25, 2026Updated last week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago