MannLabs / alphatimsLinks
An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.
☆90Updated last month
Alternatives and similar repositories for alphatims
Users that are interested in alphatims are comparing it to the libraries listed below
Sorting:
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆86Updated last month
- Open-source C++ and Python module for opening binary timsTOF data files.☆49Updated 3 months ago
- Deep learning framework for proteomics☆132Updated last month
- Rescoring and spectral library generation pipeline for proteomics.☆49Updated last week
- modular & open DIA search☆75Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆121Updated 3 months ago
- Democratizing ML in proteomics☆43Updated last month
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆48Updated last week
- Python Package for the downstream analysis of mass-spectrometry-based proteomics data☆74Updated last month
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆60Updated last month
- Instrument Application Programming Interface☆51Updated last week
- ☆41Updated 6 months ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆70Updated 2 weeks ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated this week
- A list of tools on proteomics using deep learning☆106Updated last year
- ☆20Updated 7 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆83Updated 3 years ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆65Updated 2 years ago
- ☆27Updated 2 years ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆20Updated 3 months ago
- AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…☆34Updated 5 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆48Updated 7 months ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆46Updated 6 months ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono☆224Updated this week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆62Updated this week
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆31Updated 7 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆140Updated this week
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆96Updated 2 weeks ago
- ☆63Updated 6 months ago