HUPO-PSI / ProFormaLinks
HUPO-PSI Standardized peptidoform notation
☆21Updated 3 weeks ago
Alternatives and similar repositories for ProForma
Users that are interested in ProForma are comparing it to the libraries listed below
Sorting:
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆38Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆47Updated 8 months ago
- Democratizing ML in proteomics☆50Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆29Updated last month
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆72Updated 2 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Updated 9 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆49Updated this week
- ☆20Updated 9 months ago
- Python package for investigating the structural context of PTMs☆28Updated 11 months ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Updated 2 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆45Updated 3 years ago
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Updated last month
- A python package for fast post translational modification localization, powered by Cython.☆20Updated last year
- Deep learning framework for proteomics☆137Updated 3 weeks ago
- ☆22Updated 4 years ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆32Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆52Updated last month
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆71Updated 2 weeks ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆59Updated last year
- Matthew The's implementation of MaRaCluster☆11Updated 5 months ago
- Instrument Application Programming Interface☆51Updated 2 months ago
- ☆12Updated last month
- a python package for molecular formula analysis in MS-based small molecule studies☆32Updated 4 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23Updated 6 months ago
- A deep learning toolkit for mass spectrometry☆85Updated last month
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated 2 months ago
- Streamlining Mass Spectrometry Data Visualization with Pandas☆20Updated last month
- Community-curated tutorials and datasets for ML in proteomics☆55Updated last month
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆33Updated 2 years ago
- ☆36Updated last week