HUPO-PSI Standardized peptidoform notation
☆23Mar 13, 2026Updated last week
Alternatives and similar repositories for ProForma
Users that are interested in ProForma are comparing it to the libraries listed below
Sorting:
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆34Updated this week
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆42Updated this week
- Quantitative proteomics workflow☆15Sep 30, 2022Updated 3 years ago
- Democratizing ML in proteomics☆52Mar 10, 2026Updated last week
- A Proforma 2.1 Python package for amino acid sequence analysis & manipulation.☆15Updated this week
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆51Mar 12, 2026Updated last week
- ☆14Jan 27, 2022Updated 4 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆18Updated this week
- ☆15Apr 27, 2022Updated 3 years ago
- GlyCombo, a combinatorial glycan composition assignment tool☆12Nov 16, 2025Updated 4 months ago
- A diaPASEF spectrum-centric analysis tool☆13Dec 24, 2025Updated 2 months ago
- Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provi…☆151Mar 11, 2026Updated last week
- Highly adaptable common interface for proteomics search and de novo engines☆46Aug 15, 2025Updated 7 months ago
- ☆28May 20, 2025Updated 10 months ago
- Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.☆14Sep 19, 2025Updated 6 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…☆13Mar 13, 2022Updated 4 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 2 months ago
- Library for mass spectrometry projects☆27Mar 6, 2026Updated 2 weeks ago
- ☆21Feb 14, 2025Updated last year
- EuBIC 2023 developer's meeting☆13Jan 16, 2023Updated 3 years ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆30Feb 12, 2026Updated last month
- mzSpecLib: A standard format to exchange/distribute spectral libraries☆30Oct 31, 2025Updated 4 months ago
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆128Jan 13, 2026Updated 2 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- A simple workflow for minimum energy conformer search based on force field optimization methods (UFF and MMFF94) available from RDKit.☆13May 29, 2020Updated 5 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated 2 months ago
- Rescoring and spectral library generation pipeline for proteomics.☆53Mar 6, 2026Updated 2 weeks ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Updated this week
- Proteomics search & quantification so fast that it feels like magic☆278Updated this week
- Matthew The's implementation of MaRaCluster☆11Jun 26, 2025Updated 8 months ago
- ☆34Mar 2, 2026Updated 3 weeks ago
- DeepLC: Retention time prediction for peptides carrying any modification.☆74Mar 16, 2026Updated last week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 7 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆63Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling☆29Oct 15, 2024Updated last year