A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
☆33Apr 19, 2021Updated 4 years ago
Alternatives and similar repositories for moFF
Users that are interested in moFF are comparing it to the libraries listed below
Sorting:
- ☆13Mar 19, 2024Updated 2 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 7 months ago
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆13Mar 11, 2026Updated last week
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 6 years ago
- Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities☆108Updated this week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Oct 2, 2025Updated 5 months ago
- Feature finding algorithm for detection of isotope patterns in HPLC mass spectrometry data.☆46Jun 27, 2022Updated 3 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆50Feb 10, 2026Updated last month
- Lorikeet is a JQuery plugin to view MS/MS spectra annotated with fragment ions.☆17Sep 7, 2023Updated 2 years ago
- Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful fo…☆92Aug 17, 2023Updated 2 years ago
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- Automatically exported from code.google.com/p/kojak-ms☆13Apr 11, 2025Updated 11 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆84Oct 23, 2025Updated 4 months ago
- Repository for mzIdentML and the corresponding examples☆26Jan 16, 2026Updated 2 months ago
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data☆31Oct 5, 2022Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 2 months ago
- A label free quantification tool.☆18Jan 13, 2026Updated 2 months ago
- Protein Identification with Deep Learning☆102Nov 27, 2020Updated 5 years ago
- PDV: an integrative proteomics data viewer☆61Feb 18, 2026Updated last month
- PIA - Protein Inference Algorithms☆25Feb 26, 2026Updated 3 weeks ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆125Feb 12, 2026Updated last month
- A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.☆16Aug 3, 2023Updated 2 years ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆100Updated this week
- Python bindings for Open-MS framework☆13Feb 21, 2013Updated 13 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Graphical user interface for the ThermoRawFileParser☆23Jul 5, 2024Updated last year
- Galaxy Tool Shed repositories maintained and developed by the GalaxyP community☆36Feb 2, 2026Updated last month
- Integration ribosome profiling - mass spectrometry☆15Nov 4, 2025Updated 4 months ago
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆68Jan 6, 2026Updated 2 months ago
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- Base Classes and Functions for Mass Spectrometry and Proteomics☆136Aug 26, 2025Updated 6 months ago
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 9 months ago
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated 9 months ago
- pyQms, generalized, fast and accurate mass spectrometry data quantification☆28Jan 7, 2026Updated 2 months ago
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- Python package for efficient mass spectrometry data processing and visualization☆164Mar 5, 2026Updated 2 weeks ago
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆34Aug 4, 2023Updated 2 years ago
- Convert ThermoFinningan RAW mass spectrometry files to the mzXML format☆17Nov 8, 2023Updated 2 years ago