Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.
☆15Sep 19, 2025Updated 6 months ago
Alternatives and similar repositories for DreamDIA
Users that are interested in DreamDIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆18Jun 2, 2022Updated 3 years ago
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Updated this week
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Oct 23, 2022Updated 3 years ago
- HUPO-PSI Standardized peptidoform notation☆24Mar 20, 2026Updated last week
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆20Updated this week
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆26Oct 8, 2025Updated 5 months ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 9 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated 2 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- ☆11Sep 1, 2023Updated 2 years ago
- ☆18Mar 17, 2026Updated last week
- ☆12Oct 31, 2020Updated 5 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆53Nov 18, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for summarizing open search results☆16Dec 19, 2025Updated 3 months ago
- ☆15Apr 27, 2022Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- A Proforma 2.1 Python package for amino acid sequence analysis & manipulation.☆15Updated this week
- A small library to provide peak picking for software processing mass spectrometry data☆23Dec 3, 2024Updated last year
- personal genome constructor☆10May 29, 2025Updated 10 months ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆42Mar 19, 2026Updated last week
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆63Updated this week
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated 10 months ago
- A compiler for a Standard-ML like language that generates code suitable for embedded computers.☆11Jul 10, 2023Updated 2 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 8 months ago
- ☆10Feb 4, 2025Updated last year
- ☆24Feb 26, 2023Updated 3 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆18Mar 22, 2026Updated last week
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Mar 18, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆17Dec 19, 2025Updated 3 months ago
- EasyPQP: Simple library generation for OpenSWATH☆11Updated this week
- It's the stock market game but for Wikipedia articles!☆10Nov 19, 2024Updated last year
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 4 years ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆18Jun 15, 2025Updated 9 months ago
- k-mer probability logo☆11Jan 20, 2023Updated 3 years ago
- Democratizing ML in proteomics☆52Mar 10, 2026Updated 2 weeks ago