xmuyulab / DreamDIAView external linksLinks
Software for data-independent acquisition (DIA) proteomic data processing with deep representation features.
☆14Sep 19, 2025Updated 4 months ago
Alternatives and similar repositories for DreamDIA
Users that are interested in DreamDIA are comparing it to the libraries listed below
Sorting:
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13May 23, 2025Updated 8 months ago
- Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.☆43Oct 23, 2022Updated 3 years ago
- ☆11Sep 1, 2023Updated 2 years ago
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 9 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- A label free quantification tool.☆18Jan 13, 2026Updated last month
- ☆15Apr 27, 2022Updated 3 years ago
- A python interface to the SAGE search engine for mass spectrometry proteomics☆15Jan 16, 2026Updated 3 weeks ago
- A tool for summarizing open search results☆16Dec 19, 2025Updated last month
- HUPO-PSI Standardized peptidoform notation☆23Nov 14, 2025Updated 3 months ago
- CLI toolkit for fast analysis of DIA proteomics experiments and in silico library prediction☆19Feb 7, 2026Updated last week
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Jun 15, 2025Updated 8 months ago
- Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks☆17Jun 2, 2022Updated 3 years ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆49Feb 27, 2025Updated 11 months ago
- A python package for fast post translational modification localization, powered by Cython.☆20Dec 15, 2023Updated 2 years ago
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆48Updated this week
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆52Nov 18, 2021Updated 4 years ago
- A small library to provide peak picking for software processing mass spectrometry data☆23Dec 3, 2024Updated last year
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆23Jul 25, 2025Updated 6 months ago
- ☆24Feb 26, 2023Updated 2 years ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated 8 months ago
- It's the stock market game but for Wikipedia articles!☆10Nov 19, 2024Updated last year
- PyProphet: Semi-supervised learning and scoring of OpenSWATH results.☆30Jan 27, 2026Updated 2 weeks ago
- A Rust library for peptide centric mass spec calculations centered around PSI standards and handling complex cases robustly☆40Updated this week
- Deep learning based prediction of pi-helices in protein sequences☆11Mar 24, 2023Updated 2 years ago
- A Python package for amino acid sequence analysis. Proforma 2.1 complicant.☆14Feb 6, 2026Updated last week
- A deep learning toolkit for mass spectrometry☆87Jan 7, 2026Updated last month
- Mass spectrometry data visualization☆38Nov 30, 2020Updated 5 years ago
- A Python interface to proteomics data repositories☆36Jun 19, 2025Updated 7 months ago
- An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…☆94Feb 3, 2026Updated last week
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆175Jan 22, 2026Updated 3 weeks ago
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆12Feb 16, 2020Updated 5 years ago
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 3 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 6 years ago
- Python package for efficient mass spectrometry data processing and visualization☆164Dec 18, 2025Updated last month
- The codebase of the OpenMS project☆563Updated this week
- pDeepXL: MS/MS spectrum prediction for cross-linked peptide pairs by deep learning☆12Feb 8, 2021Updated 5 years ago