theislab / DeepCollisionalCrossSection

Related projects ⓘ

Alternatives and complementary repositories for DeepCollisionalCrossSection

• MannLabs / DeepCollisionalCrossSection
  ☆11Updated 3 years ago
• statisticalbiotechnology / maracluster
  Matthew The's implementation of MaRaCluster
  ☆11Updated 2 years ago
• theGreatHerrLebert / sagepy
  A python interface to the SAGE search engine for mass spectrometry proteomics
  ☆11Updated this week
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆67Updated 3 months ago
• Proteobench / ProteoBench
  ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…
  ☆38Updated this week
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆28Updated last week
• michalsta / opentims
  Open-source C++ and Python module for opening binary timsTOF data files.
  ☆44Updated last month
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆112Updated 2 weeks ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆47Updated 5 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated 2 weeks ago
• pFindStudio / pGlyco3
  ☆15Updated 2 months ago
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆88Updated 6 months ago
• MannLabs / alphatims
  An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck I…
  ☆81Updated last year
• PNNL-Comp-Mass-Spec / Thermo-Raw-File-Reader
  .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific
  ☆38Updated 2 months ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆116Updated this week
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆38Updated this week
• MannLabs / alphadia
  modular & open DIA search
  ☆55Updated this week
• thermofisherlsms / iapi
  Instrument Application Programming Interface
  ☆44Updated last month
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆56Updated 3 weeks ago
• levitsky / identipy
  ☆10Updated last month
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆27Updated 10 months ago
• Protea-Glycosciences / GlyCombo
  GlyCombo, a combinatorial glycan composition assignment tool
  ☆12Updated last month
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆33Updated this week
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆11Updated 3 months ago
• Nesvilab / MSFragger
  Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
  ☆107Updated 5 months ago
• HUPO-PSI / ProForma
  HUPO-PSI Standardized peptidoform notation
  ☆15Updated 9 months ago
• gtluu / timsconvert
  ☆32Updated last month
• thermofisherlsms / RawFileReader
  ☆50Updated last month
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆60Updated this week
• michaelmarty / UniDec
  Universal Deconvolution of Mass and Ion Mobility Spectra
  ☆65Updated this week