suinleelab / PAUSE
Code for paper "Principled feature attribution for unsupervised gene expression analysis"
☆11Updated last year
Alternatives and similar repositories for PAUSE:
Users that are interested in PAUSE are comparing it to the libraries listed below
- ☆13Updated 5 months ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Updated last year
- ☆15Updated 7 months ago
- ☆9Updated 3 years ago
- Kdrew's scripts for handling protein complex map data☆14Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆11Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆28Updated 5 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 5 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated 5 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆24Updated 2 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆13Updated last year
- ☆20Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆22Updated 7 months ago
- Perturb-seq analysis package☆14Updated 9 months ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆10Updated 3 months ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆10Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated 10 months ago
- ☆11Updated 2 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆24Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 6 months ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- ☆16Updated 8 months ago
- ☆26Updated last year
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆25Updated 6 months ago
- ☆10Updated 5 months ago