Alternatives and similar repositories for PAUSE

Users that are interested in PAUSE are comparing it to the libraries listed below

• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• idekerlab / G2PT
  ☆19Updated last week
• visze / sequence_cnn_models
  ☆13Updated 10 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆14Updated 6 years ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• lcrawlab / recall
  Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing
  ☆15Updated last month
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago
• fratajcz / speos
  A positive-unlabeled ensemble learning framework for disease gene prioritization.
  ☆20Updated last month
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated last month
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated this week
• xmuyulab / scRNAseq_pipelines
  ☆12Updated 5 years ago
• ren-lab / snp-selex
  ☆17Updated 4 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• ML4BM-Lab / ELATUS
  ☆13Updated 8 months ago
• MarieOestreich / hCoCena
  ☆15Updated 10 months ago
• canzarlab / McSplicer
  ☆11Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• liu-bioinfo-lab / EPCOT
  ☆25Updated 2 years ago
• xiongxslab / Translatomer
  ☆24Updated 3 months ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated last year
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 5 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆16Updated last year