Alternatives and similar repositories for PAUSE

Users that are interested in PAUSE are comparing it to the libraries listed below

• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• idekerlab / G2PT
  ☆19Updated this week
• visze / sequence_cnn_models
  ☆13Updated 11 months ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 5 years ago
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• lcrawlab / recall
  Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing
  ☆16Updated last month
• fratajcz / speos
  A positive-unlabeled ensemble learning framework for disease gene prioritization.
  ☆20Updated 2 months ago
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• OSU-BMBL / scGNN2.0
  ☆12Updated 2 years ago
• jishnu-lab / SLIDE
  ☆30Updated 7 months ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆26Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated 2 months ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• ML4BM-Lab / ELATUS
  ☆13Updated 9 months ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆15Updated 6 years ago
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated 3 weeks ago
• Kari-Genomics-Lab / iDeLUCS
  Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences
  ☆15Updated last year
• Roy-lab / HiC-Reg
  HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
  ☆11Updated 5 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• mhorlacher / rbpnet
  ☆18Updated last year
• JieZheng-ShanghaiTech / HiCoEx
  A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts
  ☆12Updated 2 years ago
• goodarzilab / SwitchFinder
  ☆19Updated last year
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 9 months ago