Code for paper "Principled feature attribution for unsupervised gene expression analysis"
☆13Mar 7, 2023Updated 3 years ago
Alternatives and similar repositories for PAUSE
Users that are interested in PAUSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read, parse and operate different multiple input file formats with OpenVariant☆14Nov 28, 2025Updated 6 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆20Nov 10, 2025Updated 6 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 3 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 4 months ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 10 months ago
- SNp Exploration and Analysis using EPigenomics data☆11Jan 14, 2025Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- ☆12Jan 8, 2026Updated 4 months ago
- ☆21Feb 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆21May 18, 2026Updated last week
- ☆62Apr 5, 2024Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- ☆13Sep 14, 2025Updated 8 months ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 10 months ago
- GWAS genetics Fine-mapping method☆18May 17, 2024Updated 2 years ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Jun 19, 2023Updated 2 years ago
- ☆14Sep 1, 2024Updated last year
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 3 months ago
- ☆13Jan 23, 2025Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- ☆19Apr 25, 2023Updated 3 years ago
- ☆18Jul 3, 2022Updated 3 years ago
- Crypto bed and breakfast (Airbnb) example dapp tutorial done in stages.☆10Nov 13, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated last month
- Fast algorithms for GLM-PCA.☆16Mar 12, 2025Updated last year
- Code for the paper "Model Agnostic Interpretability for Multiple Instance Learning".☆13Jan 28, 2022Updated 4 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 7 months ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆13Nov 29, 2021Updated 4 years ago