Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
☆19Jul 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for SimBu
Users that are interested in SimBu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified access to several second-generation deconvolution methods☆105Jul 6, 2026Updated 2 weeks ago
- ☆11Apr 17, 2025Updated last year
- ☆29Updated this week
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆56Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A comprehensive TypeScript starter pack for modern web development, designed to streamline your project setup with usefull practices.☆15Jun 27, 2025Updated last year
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- ☆59Nov 21, 2020Updated 5 years ago
- ☆11May 12, 2026Updated 2 months ago
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year
- SCDC☆48Jun 20, 2025Updated last year
- Official implementation of Joint Multidimensional Scaling☆24Nov 19, 2023Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆33Dec 1, 2025Updated 7 months ago
- ☆16Sep 21, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆14Jun 28, 2026Updated 3 weeks ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆45Jul 6, 2020Updated 6 years ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆62Apr 3, 2024Updated 2 years ago
- ☆20May 20, 2021Updated 5 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆25May 9, 2018Updated 8 years ago
- Hierarchical Refinement: Optimal Transport to Infinity and Beyond☆20Sep 29, 2025Updated 9 months ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 3 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- ☆25Mar 4, 2026Updated 4 months ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆12Feb 16, 2026Updated 5 months ago
- Einstein Summation for Arrays in R☆12Jul 8, 2026Updated last week
- SPM in Julia☆13Sep 1, 2023Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 3 years ago
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene expression viewer template☆12Aug 30, 2017Updated 8 years ago
- R package: Manifold learning in R☆14Apr 7, 2020Updated 6 years ago
- http://a-terada.github.com/lamp/☆14Jul 14, 2023Updated 3 years ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- A simple package to explore MDPI´s articles by journal. A series of functions help to obtain lists of papers, obtain data from them (turn…☆21Mar 19, 2025Updated last year
- CoGO: a contrastive learning framework to predict disease similarity based on gene network and ontology structure☆16Sep 30, 2024Updated last year
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago