Simulate pseudo-bulk RNAseq samples from scRNAseq expression data
☆18Jan 5, 2026Updated 3 months ago
Alternatives and similar repositories for SimBu
Users that are interested in SimBu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified access to several second-generation deconvolution methods☆96Jan 5, 2026Updated 3 months ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- Cross Modality Optimal Transport for multimodal inference☆10Nov 29, 2024Updated last year
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Rust-based PDF viewer application built with dioxus and pdfium-render☆30Jun 24, 2025Updated 9 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Jun 16, 2021Updated 4 years ago
- ☆59Nov 21, 2020Updated 5 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- Official implementation of Joint Multidimensional Scaling☆24Nov 19, 2023Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated this week
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- SCDC☆46Jun 20, 2025Updated 9 months ago
- ☆10Mar 11, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆13Apr 3, 2026Updated last week
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆60Apr 3, 2024Updated 2 years ago
- Workshop tutorials for Pyomo.DoE☆13Jan 24, 2026Updated 2 months ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26May 9, 2018Updated 7 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Out-of-Core Principal Component Analysis☆19Dec 25, 2017Updated 8 years ago
- ☆20May 20, 2021Updated 4 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated last year
- ☆24Mar 4, 2026Updated last month
- BACNET is a Java based platform to develop website for multi-omics analysis☆13Feb 16, 2026Updated last month
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16May 16, 2023Updated 2 years ago
- SPM in Julia☆13Sep 1, 2023Updated 2 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- R package: Manifold learning in R☆13Apr 7, 2020Updated 6 years ago
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- An Osprey ruleset made for moderating Bluesky and other ATProto applications☆39Mar 4, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago
- Python Distributed Non Negative Tensor Networks☆14Oct 20, 2021Updated 4 years ago
- A comprehensive TypeScript starter pack for modern web development, designed to streamline your project setup with usefull practices.☆16Jun 27, 2025Updated 9 months ago
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 3 years ago
- Scalable framework for comparing metric measure spaces with up to 1M points.☆16Apr 6, 2021Updated 5 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year