digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
☆16Oct 31, 2024Updated last year
Alternatives and similar repositories for digitalDLSorteR
Users that are interested in digitalDLSorteR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- User-friendly bulk RNAseq deconvolution using simulated annealing☆18Feb 8, 2024Updated 2 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 3 years ago
- ☆14Nov 27, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 4 years ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated 11 months ago
- Function Enrichment analysis and Network construction☆16Apr 25, 2026Updated 5 months ago
- ☆13Jan 6, 2021Updated 5 years ago
- ☆20Sep 25, 2020Updated 6 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆15Aug 22, 2026Updated last month
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Sep 27, 2022Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆48Jun 12, 2023Updated 3 years ago
- Image-based Profiling Handbook☆11Sep 18, 2026Updated 3 weeks ago
- ☆27Jun 5, 2025Updated last year
- Notes and code from a network biology study group at UMD.☆10Apr 11, 2015Updated 11 years ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- The R code compares the performance metrics between logistic regression, SVM, Naive Bayes, Knn and random forest classifers in a 10 fold …☆15Mar 13, 2016Updated 10 years ago
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 7 years ago
- ☆17Jun 17, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 3 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 8 months ago
- A computational framework for bulk RNA-seq deconvolution☆11Dec 3, 2024Updated last year
- Analysis of (gut) microbiome in Qiime2 and R.☆25Aug 23, 2024Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆36Nov 4, 2023Updated 2 years ago
- A simple package to explore MDPI´s articles by journal. A series of functions help to obtain lists of papers, obtain data from them (turn…☆21Mar 19, 2025Updated last year
- Gene expression deconvolution using dampened weighted least squares☆37Feb 4, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SCDC☆52Jun 20, 2025Updated last year
- ☆10Sep 2, 2024Updated 2 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆25Updated this week
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated 2 months ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- A script to import a m3u playlist into Spotify☆17Nov 6, 2025Updated 11 months ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 28, 2026Updated last week