federicogiorgi / cortoLinks
corto (Correlation Tool): an R package to generate correlation-based DPI networks
☆20Updated 2 years ago
Alternatives and similar repositories for corto
Users that are interested in corto are comparing it to the libraries listed below
Sorting:
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆31Updated 2 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- ☆41Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆12Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆47Updated last year
- R package for Bioconductor submission☆35Updated 2 years ago
- Landscape Single Cell Entropy☆20Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 8 months ago
- GLASS consortium☆13Updated 3 years ago
- ☆13Updated 7 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year