federicogiorgi / corto
corto (Correlation Tool): an R package to generate correlation-based DPI networks
☆20Updated last year
Alternatives and similar repositories for corto:
Users that are interested in corto are comparing it to the libraries listed below
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- GLASS consortium☆13Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆30Updated last year
- ☆12Updated 6 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- ☆13Updated 7 years ago
- ☆18Updated 10 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Network analysis for multi-omics☆13Updated 2 weeks ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 6 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆22Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆17Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Network construction Algorithm☆20Updated 4 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- ☆11Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆11Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆38Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Single-cell Orientation Tracing☆21Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago