harvardnlp / regulatory-prediction
Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology
☆28Updated 6 years ago
Related projects: ⓘ
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆44Updated 5 years ago
- ☆11Updated 6 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 5 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 5 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 8 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆17Updated 6 years ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 2 years ago
- Amino-Acid Sequence Annotation Predictor (ASAP)☆25Updated 4 years ago
- Tools for munging genomic data☆21Updated 5 years ago
- ☆12Updated 5 years ago
- ☆21Updated 7 years ago
- Theano-based Deep Learning library (convnets, recurrent neural networks, and more).☆14Updated 7 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated last year
- Understanding sequence conservation with deep learning☆19Updated 7 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 3 years ago
- Docker image for the DeepBind method.☆16Updated 8 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆9Updated 3 years ago
- Concise: Keras extension for regulatory genomics☆32Updated last year
- A deep learning package for predicting TF binding☆41Updated 4 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Updated 7 years ago
- NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chrom…☆27Updated 3 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆49Updated 7 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- CS273B Deep Learning for Genomics Course Materials☆32Updated 4 years ago
- ☆25Updated 2 years ago
- Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications☆62Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 4 years ago
- Bayesian Factorization with Side Information in C++ with Python wrapper☆41Updated 2 years ago
- Perform hyper-parameter tuning, training, testing and prediction with Keras☆44Updated 6 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆24Updated 5 years ago