BaderLab / EnrichmentMapApp

Related projects ⓘ

Alternatives and complementary repositories for EnrichmentMapApp

• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆30Updated last year
• datapplab / SBGNview
  ☆25Updated last year
• lawremi / rtracklayer
  R interface to genome annotation files and the UCSC genome browser
  ☆28Updated 2 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆32Updated 3 years ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆60Updated 9 months ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆23Updated last week
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆33Updated 2 months ago
• AllenInstitute / NucCellTypes
  ☆13Updated 5 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆21Updated last month
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆30Updated last week
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆28Updated 4 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆25Updated 3 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 3 years ago
• KnowEnG / SequencEnG
  An interactive learning resource for next-generation sequencing (NGS) techniques
  ☆27Updated 6 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆15Updated 5 years ago
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆17Updated 4 years ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆37Updated last week
• BgeeDB / BgeeDB_R
  Source code of the R packge BgeeDB to use data from the Bgee database
  ☆14Updated last week
• wassermanlab / JASPAR-UCSC-tracks
  Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
  ☆13Updated 2 years ago
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆27Updated 5 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated 6 months ago
• SamBuckberry / RUN-WGCNA
  Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)
  ☆27Updated 9 years ago
• UCLouvain-CBIO / depmap
  Cancer Dependency Map package
  ☆24Updated 2 months ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆17Updated 7 months ago
• jokergoo / BioMartGOGeneSets
  Gene Ontology Gene Sets from BioMart
  ☆12Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆36Updated last week
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• drisso / RUVSeq
  Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…
  ☆12Updated last year