hall-lab / gtexLinks
GTEx analysis scripts
☆20Updated 8 years ago
Alternatives and similar repositories for gtex
Users that are interested in gtex are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- ☆13Updated 7 years ago
- ☆17Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A tool to plot significant regions of GWAS☆30Updated 2 years ago
- ☆38Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ☆23Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- DriverPower☆26Updated 6 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago