Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
☆14Aug 19, 2020Updated 5 years ago
Alternatives and similar repositories for EpigenomicsTutorial-ISMB2017
Users that are interested in EpigenomicsTutorial-ISMB2017 are comparing it to the libraries listed below
Sorting:
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- ATAC-seq lab for BIOINF525☆10Mar 31, 2016Updated 9 years ago
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- ☆10Oct 17, 2019Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- Data science in R notes☆15Apr 28, 2025Updated 10 months ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19May 26, 2025Updated 9 months ago
- Cities database and a game!☆17Jan 26, 2020Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆74Jan 8, 2025Updated last year
- ☆16Jan 2, 2024Updated 2 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- Code to run OncoSig Analyses☆18Sep 30, 2020Updated 5 years ago
- ☆18Feb 24, 2017Updated 9 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Jun 11, 2020Updated 5 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆24Jul 31, 2023Updated 2 years ago
- workshop website on readthedocs☆21Sep 26, 2025Updated 5 months ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆24Feb 1, 2020Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated last month
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24May 12, 2025Updated 9 months ago
- ATAC-seq lab for BIOINF545☆24Feb 17, 2026Updated last week
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆26Nov 17, 2022Updated 3 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Feb 6, 2026Updated 3 weeks ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 3 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Aug 17, 2016Updated 9 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Apr 10, 2019Updated 6 years ago
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Jul 13, 2023Updated 2 years ago
- ☆12Oct 29, 2025Updated 3 months ago
- bibtex parser for R☆39Feb 2, 2026Updated 3 weeks ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Jan 9, 2024Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆37Dec 16, 2020Updated 5 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 6 months ago
- parallel-fastq-dump implementation in bash script☆41Nov 28, 2019Updated 6 years ago