kimpenn / PIVOTLinks
Platform for Interactive analysis and Visualization Of Transcriptomics data
☆27Updated 5 years ago
Alternatives and similar repositories for PIVOT
Users that are interested in PIVOT are comparing it to the libraries listed below
Sorting:
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 9 months ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Glimma R package☆50Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated last week
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- R package for genomic feature analysis and visualization☆79Updated 9 months ago
- Differential Count Data Analysis Toolbox☆61Updated 2 years ago
- Transcript quantification import for modular pipelines☆142Updated 4 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 2 years ago
- ☆29Updated 6 years ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆79Updated 5 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Student website repo for 2015/2016 Canadian Bioinformatics Workshops☆35Updated 2 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- ☆74Updated 4 years ago
- Tools for visualizing genomics data☆69Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Updated 4 years ago
- ☆33Updated 3 years ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago