kimpenn / PIVOTLinks
Platform for Interactive analysis and Visualization Of Transcriptomics data
☆27Updated 5 years ago
Alternatives and similar repositories for PIVOT
Users that are interested in PIVOT are comparing it to the libraries listed below
Sorting:
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆51Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 9 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 weeks ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- ☆33Updated 3 years ago
- SeqMonk NGS visualisation and analysis tool☆49Updated this week
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 7 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- An interactive web-tool for RNA-seq analysis☆68Updated 4 months ago
- Glimma R package☆50Updated 9 months ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- ☆30Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 2 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 3 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 8 months ago