kimpenn / PIVOT
Platform for Interactive analysis and Visualization Of Transcriptomics data
☆27Updated 4 years ago
Alternatives and similar repositories for PIVOT:
Users that are interested in PIVOT are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated last month
- SeqMonk NGS visualisation and analysis tool☆49Updated 2 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- Summer school course materials collection☆25Updated 6 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago
- Mapped QC analysis program☆43Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Glimma R package☆50Updated 7 months ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 3 weeks ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 8 months ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated 2 weeks ago
- Utility functions for FACETS☆34Updated last year
- Visual exploratory analysis of gene expression data☆43Updated last month
- ☆33Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- ☆25Updated 10 months ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Updated 5 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year