genepi-freiburg / gwasLinks
Scripts for GWAS association and metaanalysis
☆43Updated 5 years ago
Alternatives and similar repositories for gwas
Users that are interested in gwas are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- ☆78Updated 11 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Read PLINK BED/BIM/FAM files into R☆44Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- R package to work with ctDNA sequencing data☆45Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 7 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆66Updated 7 years ago
- ☆48Updated 5 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆94Updated 3 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- TOPMed analysis pipeline☆52Updated 2 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…☆43Updated 3 years ago
- ☆27Updated 7 months ago
- ☆39Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- ☆89Updated 5 years ago
- ☆29Updated 6 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- Main ricopili repo for public releases☆51Updated 8 months ago