genepi-freiburg / gwasLinks
Scripts for GWAS association and metaanalysis
☆43Updated 4 years ago
Alternatives and similar repositories for gwas
Users that are interested in gwas are comparing it to the libraries listed below
Sorting:
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated last month
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- ☆25Updated last year
- Burden testing against public controls☆50Updated last year
- ☆40Updated 7 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Sequence kernel association test (SKAT)☆50Updated 3 months ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Functional genomics and genome-wide association studies☆67Updated 6 years ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 3 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 5 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- ☆30Updated 3 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Main ricopili repo for public releases☆48Updated last month
- Generalized linear Mixed Model Association Tests☆42Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Fast, integrative fine mapping with functional data☆58Updated 5 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆63Updated 7 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆42Updated last week
- ☆78Updated 11 years ago