statgen / encoreLinks
Encore Analysis Server
☆13Updated 2 months ago
Alternatives and similar repositories for encore
Users that are interested in encore are comparing it to the libraries listed below
Sorting:
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- ☆26Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Code to reproduce analyses from the sleuth paper☆16Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆22Updated 2 years ago
- Interface to various variant calling formats.☆31Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- ☆11Updated 7 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago
- ☆29Updated 4 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago