statgen / encoreLinks
Encore Analysis Server
☆13Updated 2 months ago
Alternatives and similar repositories for encore
Users that are interested in encore are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Interface to various variant calling formats.☆31Updated last year
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- ☆26Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated 2 years ago
- ☆30Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- ☆22Updated 9 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 8 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago