Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
☆33Feb 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for gwasTools
Users that are interested in gwasTools are comparing it to the libraries listed below
Sorting:
- A tool to plot significant regions of GWAS☆29Jan 27, 2023Updated 3 years ago
- Fast manhattenplots using ggplot2☆13Feb 19, 2024Updated 2 years ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 2 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 6 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Encore Analysis Server☆13Nov 18, 2025Updated 3 months ago
- Python script for multivariate GWAS meta-analysis☆24Dec 6, 2024Updated last year
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- ☆196May 2, 2022Updated 3 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated 11 months ago
- ☆18Oct 4, 2023Updated 2 years ago
- Create regional association plots from GWAS or meta-analysis☆62Jan 21, 2020Updated 6 years ago
- Make LocusZoom-like plots with your own LD matrix.☆49Jul 17, 2022Updated 3 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆191Sep 11, 2025Updated 5 months ago
- https://filippob.github.io/introduction_to_gwas/☆22Jul 2, 2025Updated 8 months ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- Tools for doing x way meta-analysis☆12Apr 12, 2022Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated last month
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 6 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- An R package for creating mirrored Manhattan plots☆18Sep 30, 2022Updated 3 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 6 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆63Oct 22, 2025Updated 4 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33May 15, 2019Updated 6 years ago
- Codebook from my GWAS cookbook☆193May 26, 2022Updated 3 years ago
- ☆38Jan 20, 2021Updated 5 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Feb 8, 2026Updated 3 weeks ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 2 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Oct 14, 2017Updated 8 years ago
- A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.☆164May 9, 2025Updated 9 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Jun 15, 2021Updated 4 years ago
- Manhattan plot Generator☆24Jun 1, 2020Updated 5 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- Heritability Estimation with high Efficiency using LD and Summary Statistics☆13Feb 14, 2024Updated 2 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated 6 months ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Jun 9, 2022Updated 3 years ago
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆12Sep 3, 2024Updated last year