ilarsf / gwasToolsLinks
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
☆33Updated 5 months ago
Alternatives and similar repositories for gwasTools
Users that are interested in gwasTools are comparing it to the libraries listed below
Sorting:
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated last month
- Generalized linear Mixed Model Association Tests☆44Updated 2 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆41Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated last week
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Identify cell types and pathways affected by genetic risk loci.☆36Updated last year
- Bayesian hierarchical model for complex trait analysis☆46Updated last year
- Query the gene models of a given organism/assembly☆27Updated 2 weeks ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Main ricopili repo for public releases☆50Updated 7 months ago
- Genomic plot in trellis layout☆41Updated last year
- Manhattan++☆28Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 8 months ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 6 years ago
- A Fine-Mapping pipeline☆21Updated 6 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- genetic correlation between phenotypes in the UK biobank☆13Updated last year