cauyrd / transIndel
Indel caller for DNA-seq or RNA-seq
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for transIndel
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 10 months ago
- ☆21Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 2 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- processing 10x genomics reads☆23Updated 5 years ago
- Tools to process LIANTI sequence data☆23Updated 5 years ago
- ☆39Updated last month
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- Version II of Mandalorion☆32Updated 5 years ago
- Master of Pores 2☆23Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- toolkit to process gtf files☆16Updated 2 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆18Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- ☆21Updated 2 months ago
- Genomic Association Tester☆29Updated last year
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆36Updated last month
- Automated Detection and Qualification of Differential Methylation☆11Updated 11 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆23Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆31Updated 3 weeks ago