Indel caller for DNA-seq or RNA-seq
☆16Aug 8, 2023Updated 2 years ago
Alternatives and similar repositories for transIndel
Users that are interested in transIndel are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 3 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Identify differentially expressed k-mers between RNA-Seq datasets☆11Mar 1, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Package provides java implementation of various clustering algorithms☆11Jun 5, 2017Updated 8 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34May 20, 2026Updated last week
- ☆11Feb 14, 2023Updated 3 years ago
- The integrated pipeline for Indel detection☆17Apr 29, 2018Updated 8 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An external library for delivering Slurm Elastic Computing.☆12Mar 31, 2017Updated 9 years ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- Encore Analysis Server☆13Apr 30, 2026Updated 3 weeks ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 10 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets☆18Jul 10, 2020Updated 5 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Image-translation-assisted segmentation in 3D☆28Mar 14, 2022Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- ☆13Apr 5, 2024Updated 2 years ago
- Datastores for reads, not your papa's FASTQ files.☆11Jul 28, 2023Updated 2 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- personal genome constructor☆11May 29, 2025Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 2 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Jul 14, 2016Updated 9 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10May 16, 2026Updated last week
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆26Aug 22, 2024Updated last year
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago