cauyrd / transIndelLinks
Indel caller for DNA-seq or RNA-seq
☆14Updated last year
Alternatives and similar repositories for transIndel
Users that are interested in transIndel are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- ☆22Updated 6 months ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆19Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 3 years ago
- ☆41Updated 9 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆39Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- ☆35Updated 4 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Updated 6 years ago