statgen / topmed_variant_calling

Related projects ⓘ

Alternatives and complementary repositories for topmed_variant_calling

• CshlSiepelLab / LINSIGHT
  ☆24Updated 5 months ago
• freeseek / gwaspipeline
  ☆40Updated 6 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆21Updated 6 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated last year
• AndreasHeger / gat
  Genomic Association Tester
  ☆29Updated last year
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆32Updated 7 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆48Updated 3 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆53Updated 2 weeks ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆21Updated last week
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 weeks ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 5 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• zhouhufeng / FAVORannotator
  ☆20Updated last year
• awilfert / PSAP-pipeline
  ☆14Updated 7 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 3 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• babelomics / SMAca
  SMN1 copy-number and sequence variant analysis from next generation sequencing data
  ☆22Updated last year
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆38Updated 2 years ago
• slzhao / QC3
  QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
  ☆31Updated 8 years ago
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 2 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆16Updated 7 years ago
• sdchandra / CNAclinic
  ☆22Updated 3 months ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆32Updated 3 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 8 months ago
• talkowski-lab / SV-Adjudicator
  ☆25Updated 6 years ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 4 years ago
• umccr / vcf_stuff
  📊Evaluating, filtering, comparing, and visualising VCF
  ☆27Updated last year