Alternatives and similar repositories for bonsaitree

Users that are interested in bonsaitree are comparing it to the libraries listed below

• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• ssadedin / ximmer
  Ximmer is a system for CNV calling on exome and targeted genomic sequencing
  ☆19Updated last month
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 8 months ago
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 5 months ago
• seqan / vaquita
  Identification of structural variations
  ☆12Updated 3 years ago
• DecodeGenetics / popvcf
  Lossless VCF compression
  ☆21Updated 3 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• WilsonSayresLab / XYalign
  Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
  ☆23Updated 6 years ago
• cdarby / samovar
  Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
  ☆23Updated 6 years ago
• paudano / kestrel
  Mapping-free variant caller for short-read Illumina data
  ☆20Updated 5 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 6 years ago
• medvedevgroup / vargeno
  Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
  ☆22Updated 6 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆16Updated 2 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated 2 years ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 7 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• lh3 / sgdp-fermi
  FermiKit small variant calls for public SGDP samples
  ☆17Updated 9 years ago
• humanlongevity / tredparse
  TREDPARSE: HLI Short Tandem Repeat (STR) caller
  ☆25Updated 5 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 2 weeks ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 7 years ago