ablab / rnaquast
Quality assessment of de novo transcriptome assemblies from RNA-Seq data
☆21Updated 5 months ago
Alternatives and similar repositories for rnaquast:
Users that are interested in rnaquast are comparing it to the libraries listed below
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆30Updated 3 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆20Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago
- convert a blast output to a bed file☆12Updated 9 years ago
- ☆16Updated last year
- Implementation of ToL genome assembly workflows☆20Updated this week
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 4 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 7 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- A pipeline for whole genome assembly☆16Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆9Updated 2 years ago
- ☆20Updated 8 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- transposable element typing pipeline☆17Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- MIRA sequence assembler☆28Updated 3 months ago
- ☆41Updated last month
- A tool to extract LOH blocks from VCF, BAM and FASTA data