chenying2016 / queriesLinks
hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.
☆27Updated 5 years ago
Alternatives and similar repositories for queries
Users that are interested in queries are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- ☆29Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- ☆30Updated last year
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated this week
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Find Unique genomic Regions☆32Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 4 months ago
- ☆12Updated 8 months ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- ☆30Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago