chenying2016 / queries
hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.
☆25Updated 4 years ago
Alternatives and similar repositories for queries:
Users that are interested in queries are comparing it to the libraries listed below
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated last month
- Find Unique genomic Regions☆29Updated 3 weeks ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- ☆24Updated 3 years ago
- Validate and edit small eukaryotic genome assemblies☆32Updated last year
- read cloud assembler☆34Updated 5 years ago
- StrainFinder☆27Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆30Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- ☆23Updated 5 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Identifying repeats in high-throughput sequencing data☆15Updated 9 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago