raw-lab / DeGenPrimeLinks
Primer design from single genes to whole gene families for unlocking the tree of life
☆16Updated 6 months ago
Alternatives and similar repositories for DeGenPrime
Users that are interested in DeGenPrime are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15Updated 6 months ago
- MAGScoT - a MAG scoring and refinement tool☆39Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆35Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Bacterial GWAS analysis☆46Updated last month
- Discover and annotate the virome☆54Updated last month
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last month
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- ☆24Updated 10 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- snapper☆13Updated last year
- UFCG: Universal Fungal Core Genes☆34Updated 4 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Gene-flank analysis tool☆34Updated 11 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 4 months ago
- ☆22Updated 2 years ago