raw-lab / DeGenPrimeLinks
Primer design from single genes to whole gene families for unlocking the tree of life
☆16Updated 2 months ago
Alternatives and similar repositories for DeGenPrime
Users that are interested in DeGenPrime are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆30Updated last year
- snapper☆13Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 2 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆41Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 2 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated 2 weeks ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 4 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆28Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Quality control plotting for long reads☆10Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated 2 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 10 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆32Updated last week
- Prophage Activity Estimator☆26Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆37Updated 4 months ago