Primer design from single genes to whole gene families for unlocking the tree of life
☆16May 14, 2026Updated 4 months ago
Alternatives and similar repositories for DeGenPrime
Users that are interested in DeGenPrime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Updated this week
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 3 months ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated last month
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022☆13Jan 8, 2024Updated 2 years ago
- ☆16May 1, 2025Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆66Apr 22, 2026Updated 4 months ago
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 4 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 10 months ago
- ☆15Oct 14, 2023Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Nov 17, 2025Updated 10 months ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆45Feb 11, 2023Updated 3 years ago
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- ☆13Jan 29, 2025Updated last year
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆20Mar 17, 2021Updated 5 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆27Jul 10, 2026Updated 2 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 6 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 2 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆27Feb 23, 2026Updated 6 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Compressor for Nanopore Sequencing Reads☆25Feb 10, 2023Updated 3 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 3 years ago
- Local alignment search with k-bounded matching statistics.☆24Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 2 weeks ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- ☆25Sep 11, 2026Updated last week
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago