raw-lab / DeGenPrimeLinks
Primer design from single genes to whole gene families for unlocking the tree of life
☆16Updated 5 months ago
Alternatives and similar repositories for DeGenPrime
Users that are interested in DeGenPrime are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆29Updated last year
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 6 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Discover and annotate the virome☆53Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- MAG Circularization Method☆32Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 8 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 7 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- scripts for microbiome analysis☆11Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- strain-level analysis tools☆39Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago