raw-lab / DeGenPrimeLinks
Primer design from single genes to whole gene families for unlocking the tree of life
☆16Updated 4 months ago
Alternatives and similar repositories for DeGenPrime
Users that are interested in DeGenPrime are comparing it to the libraries listed below
Sorting:
- Microbial agile accurate SNP Typer☆29Updated last year
- Genomewide Epistasis Analysis on Bacteria☆14Updated 5 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- snapper☆13Updated last year
- Bacterial GWAS analysis☆44Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆34Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Genome size estimation from long read overlaps☆62Updated 3 weeks ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- Discover and annotate the virome☆53Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated this week
- MAG Circularization Method☆32Updated 3 years ago
- strain-level analysis tools☆39Updated 11 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- scripts for microbiome analysis☆11Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- ☆24Updated 8 months ago