pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning
☆16Feb 19, 2026Updated 2 months ago
Alternatives and similar repositories for LookingGlass
Users that are interested in LookingGlass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 10 months ago
- ☆15Dec 21, 2021Updated 4 years ago
- BioSeq-BLM: a platform for analyzing DNA, RNA and protein sequences based on biological language models☆14Aug 21, 2022Updated 3 years ago
- Deep learning based alignment-free method for protein family modeling and prediction☆16Jul 31, 2018Updated 7 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆14Sep 6, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 7 months ago
- ☆26Feb 27, 2023Updated 3 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 5 months ago
- ☆16Feb 5, 2025Updated last year
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆18Dec 10, 2022Updated 3 years ago
- Library of models for Protein Function prediction (part of the 18th top solution out of 1625 teams in CAFA5)☆20May 23, 2025Updated 10 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆79Sep 9, 2025Updated 7 months ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- Alignment-free structure prediction using protein language models☆22Nov 2, 2022Updated 3 years ago
- Official development code of the Automatic Scoring of Atopic Dermatitis (ASCORAD) by Legit.Health 🩺🤖☆20Mar 27, 2023Updated 3 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆13Apr 3, 2026Updated 2 weeks ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 8 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- ☆19Nov 16, 2018Updated 7 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated 9 months ago
- Fit LOg-RAtio Lasso regression for compositional covariates☆15Feb 8, 2026Updated 2 months ago
- ☆16May 19, 2025Updated 11 months ago
- This repo demonstrates the development of Retrieval Augmented Generation (RAG).☆11May 3, 2025Updated 11 months ago
- Shiny UI for the NGLVieweR package☆11Nov 19, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Open Biodiversity Knowledge Management System☆18Apr 8, 2026Updated last week
- Collection of notebooks exploring conv nets in detail.☆10Sep 14, 2017Updated 8 years ago
- ☆18Nov 7, 2025Updated 5 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year