Alternatives and similar repositories for DiTing:

Users that are interested in DiTing are comparing it to the libraries listed below

• qichao1984 / NCyc
  ☆49Updated 4 years ago
• Russel88 / DOC
  Dissimilarity Overlap Curve analysis
  ☆11Updated 2 years ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆46Updated 3 years ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• caozhichongchong / arg_ranker
  ☆28Updated last year
• allind / EukDetect
  ☆50Updated 11 months ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆29Updated 7 years ago
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆52Updated last week
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆59Updated 3 years ago
• ErnakovichLab / dada2_ernakovichlab
  ☆14Updated this week
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆31Updated last month
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 2 years ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 7 months ago
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆34Updated 2 months ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆12Updated 5 years ago
• minoh0201 / MetaCompare
  MetaCompare
  ☆17Updated last year
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆65Updated 7 months ago
• KennthShang / PhaBOX
  Local version of the virus identification and analysis web server (tool set)
  ☆44Updated 2 weeks ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆43Updated 4 years ago
• Arkadiy-Garber / FeGenie
  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
  ☆54Updated 3 years ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆13Updated 8 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆32Updated 4 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆29Updated 8 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆40Updated last year
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆57Updated last year
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆27Updated 3 months ago
• Microbial-Ecology-Group / AMRplusplus
  AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…
  ☆33Updated this week
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• xiaole99 / ARGs-OAP-v2.0-development
  This is the source code for ARGs-OAP v2.0 construction
  ☆12Updated 5 years ago