xuechunxu / DiTingLinks
DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
☆47Updated 10 months ago
Alternatives and similar repositories for DiTing
Users that are interested in DiTing are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- MetaCompare☆19Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- code repo for mobileOG-db☆40Updated 4 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last month
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- ☆53Updated 3 months ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆62Updated 3 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆60Updated 6 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆78Updated 9 months ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ☆40Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆76Updated last month
- ☆34Updated 4 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- dada2 formatted nifH database☆12Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆58Updated last year
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated last week
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆16Updated last year